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setup.py
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from setuptools import setup
methylpy_version = '1.3.7'
setup(
name='methylpy',
version=methylpy_version,
author='Yupeng He',
author_email='yupeng.he.bioinfo@gmail.com',
packages=['methylpy'],
license='LICENSE.txt',
description='Bisulfite sequencing data processing and differential methylation analysis',
long_description=open('docs/README.rst').read(),
install_requires=[
"numpy >= 1.6.1",
"scipy >= 0.10.0",
],
package_data = {
'methylpy.test':['test/*'],
'methylpy':['rms.cpp', 'run_rms_tests.out']
},
keywords = ["Bioinformatics pipeline",
"DNA methylation",
"Bisulfite sequencing data",
"Nome-seq data",
"Differential methylation",
"Calling DMRs",
"Epigenetics",
"Functional genomics"],
scripts = ["bin/methylpy"]
)
if __name__ == '__main__':
f = open("methylpy/__init__.py",'w')
f.write("__version__ = \'"+methylpy_version+"\'"+"\n")
f.close()