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Commits on Jul 29, 2024

• update readme

  djyamunaq

  committed
  8199880

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Commits on Jul 27, 2024

• refactor: change arguments names

  djyamunaq

  committed
  7d288db

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Commits on Apr 23, 2024

• refactor: Clean files

  djyamunaq

  committed
  28600d3

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• feat: Add bowtie2

  djyamunaq

  committed
  3f50efc

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• refactor: Remove minimap2 submodule

  djyamunaq

  committed
  f520e0e

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Commits on Feb 28, 2024

• Feature: Add --saveBam flag

  djyamunaq

  committed
  d8f1dfb

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Commits on Jan 15, 2024

• Add alignment in data input pre-processing

  djyamunaq

  committed
  288babb

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Commits on Jan 10, 2024

• pyDamage fixed

  djyamunaq

  committed
  3e9040b

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Commits on Jan 9, 2024

• Fix PMDtools

  djyamunaq

  committed
  4ac8b3a

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• Feature: add sort option + support for .bam/.sam files

  djyamunaq

  committed
  ed47d8e

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Commits on Dec 20, 2023

• Update readme

  djyamunaq

  committed
  8742bc3

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• Update readme with description

  djyamunaq

  committed
  45bcdd9

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• Update install.sh: atlas installation

  djyamunaq

  committed
  a9abe0e

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• Implemented DamageProfiler

  djyamunaq

  committed
  a421f25

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• Update example data

  djyamunaq

  committed
  4877466

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• Update install.sh: pyDamage installation

  djyamunaq

  committed
  cb5b23f

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• pyDamage implemented (sort problem to solve) + .sam to .bam

  djyamunaq

  committed
  45de615

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Commits on Dec 13, 2023

• Remove __pycache__

  djyamunaq

  committed
  8ad0443

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• Add .data folder

  djyamunaq

  committed
  9014c0d

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• Change minimap2 source

  djyamunaq

  committed
  fd92231

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• Change minimap2 source

  djyamunaq

  committed
  13fa314

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• Added git submodules

  djyamunaq

  committed
  ba0d3e2

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• Update install.sh file + .gitignore

  djyamunaq

  committed
  5cfb084

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• Refactored src => classpipe

  djyamunaq

  committed
  cc01fae

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• Feature: PMDtools running

  djyamunaq

  committed
  f716ebf

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• Update main file

  djyamunaq

  committed
  4b843ec

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• Add .gitignore

  djyamunaq

  committed
  34ab208

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• Remove .egg-info files

  djyamunaq

  committed
  86a874c

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• First commit

  djyamunaq

  committed
  97b2873

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Commits on Dec 8, 2023

• Initial commit

  djyamunaq

  authored
  fb09fe3

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