Plant phenotyping with image analysis

Plant Phenotyping APP

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

The official repository for the paper: Scalable learning for bridging the species gap in image-based plant phenotyping.

Regression in Convolutional Neural Network applied to Plant Leaf Count

[ISPRS P&RS] Unsupervised shape-aware SOM down-sampling for plant point clouds

We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals

Greenotyper is a plant phenotyping tool used for detecting multiple plants on an image and measuring size and greenness of each individual plant over time.

Code for taking measurements from images of an object on top of a calibration pattern.

Batch process FLIR radiometric (thermal) JPEGs and generate clean lossless images with consistent scale and palette

Phenome 2020 Digital Phenotyping workshop materials

Modular, Scalable Phenomic Data Processing Pipelines

A modular software architecture for Automatic Plant Phenotyping

Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping

A repository with notes from the seminar given on 28 November 2018.

A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species

Main repo for the running/training on the dataset presented in 'High-fidelity Wheat Plant Reconstruction using 3D Gaussian Splatting and Neural Radiance Fields'

Detecting phenotypic traits such as leaf and collar count in soybean plants using deep learning

Application for hyper/multispectral image analysis

Workflow for seed phenotyping of USDA rice minicore population, including statistical analysis, and GWAS (Modified from Marrano and Moyers, 2022)