phylogenetic-compression

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Accurate, resource-frugal and deterministic DNA sequence classifier.

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

bioinformatics compression indexing bacteria genomes phylogeny assemblies mof k-mers phylogenetic-compression

Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

bioinformatics compression indexing bacteria genomes phylogeny assemblies mof k-mers phylogenetic-compression prophyle

Supplementary repository for "Efficient and robust search of microbial genomes via Phylogenetic Compression"

bioinformatics compression indexing bacteria genomes phylogeny assemblies mof k-mers phylogenetic-compression

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