LLM for Drug Editing, ICLR 2024
This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)
Predict AMPs in (meta)genomes and peptides
A Rust implementation of the LightDock macromolecular docking software
Snakemake-based computational workflow for neoantigen prediction from diverse sources
Electronic lab notebook for organic chemistry
The GAN model for designing AMP
mPARCE: Protocol for iterative optimization of modified peptides bound to protein targets
Python script to visualize helical wheels based on input sequence.
Application of deep generative model discovers novel and diverse functional peptides against microbial resistance
Tools for exploration and analysis of biochemical data like genomics and proteins
A parametric approach for molecular encodings using multilevel atomic neighborhoods applied to peptide classification
Protein Cleaver is a versatile tool for protein analysis and digestion.
Project for course DD2404. The project focuses on creating a classifier for proteins with signal peptides, using machine learning. Currently, the scripts are based on Convolutional neural networks, but I might implement a GAN and a Hidden Markov Model too.
SARS-CoV-2 Peptide Vaccine, Gen 12
Highly customizable research-oriented peptide search engine
Contains relevant project files to publicly available Peptide Alkaloid database "Peptaloid"
Peptide Mapping in Genome and peptide Detection in Transcriptomes
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