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I am having difficulties running a Matlab script with the SPM standalone in a Ubuntu Docker container. Although I have set "SPM_HTML_BROWSER=0" (as suggested by the docs), I still have an error related to the UI not being supported by Matlab in a docker container.
I figured out the issue — this was a re-run, which mean there was existing SPM.mat files. SPM should handle this case for commandline usage of spm_jobman.
Hello SPM experts,
I am having difficulties running a Matlab script with the SPM standalone in a Ubuntu Docker container. Although I have set "SPM_HTML_BROWSER=0" (as suggested by the docs), I still have an error related to the UI not being supported by Matlab in a docker container.
Error which stops fMRI model specification:
After this warning occurs, the script hangs.
I am calling SPM standalone as the following:
Does anyone have help for this? It seems like there should be an environment variable or config to prevent this UI component from being shown.
Environment information:
SPM Standalone:
https://www.fil.ion.ucl.ac.uk/spm/download/restricted/utopia/spm12/spm12_r7771_Linux_R2022b.zip
MCR: Matlab 2022b
Ubuntu:latest
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