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Bioframe.overlap RAM error

Status: Open.

#219 In open2c/bioframe;

· talipzengin opened on Aug 3, 2024

Python 3.13: test_assembly_info fails with AttributeError

Status: Open.

#209 In open2c/bioframe;

· penguinpee opened on May 10, 2024

Restore and document additional return_input args for overlap

Status: Open.

#197 In open2c/bioframe;

· nvictus opened on Apr 14, 2024

default dtypes & core.construction

Status: Open.

#188 In open2c/bioframe;

· smitkadvani opened on Feb 12, 2024

to_bigwig: wrong format for chromsizes

enhancement

Status: Open.

#168 In open2c/bioframe;

· rusch-emma opened on Aug 18, 2023

Assorted bugs and possibly undefined behavior in closest

bug

Status: Open.

#167 In open2c/bioframe;

· endrebak opened on Jul 16, 2023

Suggestion for updating the closest function.

enhancement

Status: Open.

#163 In open2c/bioframe;

· WANGchuang715 opened on Jun 7, 2023

bioframe.assign_view drop_unassigned drops all NaNs?

question

Status: Open.

#160 In open2c/bioframe;

· Phlya opened on May 31, 2023

reading bigwigs into dataframes

enhancement

Status: Open.

#153 In open2c/bioframe;

· gfudenberg opened on May 25, 2023

Passing metadata (/configuration?) through DataFrame.attrs

enhancement

Status: Open.

#151 In open2c/bioframe;

· ivirshup opened on May 7, 2023

Strand-aware expand (bedtools slop)

enhancement

Status: Open.

#144 In open2c/bioframe;

· ivirshup opened on Apr 18, 2023

Bring back GTF attributes parser?

enhancement

Status: Open.

#141 In open2c/bioframe;

· nvictus opened on Apr 3, 2023