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Not working properly for PacBio MAS-Iso-Seq Data

Status: Open.

#42 In mortazavilab/TranscriptClean;

· mbroad1 opened on Jan 27, 2025

No splice donors or acceptors found on chromosomes:

Status: Open.

#41 In mortazavilab/TranscriptClean;

· MustafaElshani opened on Nov 4, 2024

Terminated following "KeyboardInterrupt"

Status: Open.

#40 In mortazavilab/TranscriptClean;

· sbresnahan opened on Oct 9, 2024

warning message: "Problem encountered while correcting transcript " single positional indexer is out-of-bounds

Status: Open.

#38 In mortazavilab/TranscriptClean;

· criphg opened on May 2, 2023

invalid literal for int() with base 10: '1307=1' and UserWarning: Problem parsing transcript with ID 'transcript/10670'

Status: Open.

#28 In mortazavilab/TranscriptClean;

· philge opened on Mar 10, 2022

list index out of range

Status: Open.

#27 In mortazavilab/TranscriptClean;

· NiklasDreyer opened on Nov 26, 2021

generate_report.R have noused argument

Status: Open.

#26 In mortazavilab/TranscriptClean;

· gongjingtang opened on Jul 26, 2021

Is there a strong repair mode？

Status: Open.

#22 In mortazavilab/TranscriptClean;

· Trandamere opened on Jul 19, 2020

No such file or directory

Status: Open.

#19 In mortazavilab/TranscriptClean;

· number-25 opened on Feb 5, 2020

CIGAR operations out of range after splice junction correction

Status: Open.

#16 In mortazavilab/TranscriptClean;

· msto opened on Sep 27, 2019

Quality scores lost

Status: Open.

#12 In mortazavilab/TranscriptClean;

· laurenfitch opened on Jun 20, 2019

Incompatible with CIGAR operators X/=

Status: Open.

#10 In mortazavilab/TranscriptClean;

· pdishuck opened on Apr 12, 2019