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MATLAB code and data supporting Carraro L, Mächler E, Wüthrich R, Altermatt F. Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems, Nature Communications (accepted), 2020.

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lucarraro/eDITH-thur

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eDITH-thur

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MATLAB code and data supporting Carraro L, Mächler E, Wüthrich R, Altermatt F. Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems, Nature Communications (accepted), 2020.

Main scripts

  • ANALYZE_DATA.m: analyzes data and produces figures and tables shown in the manuscript and extended data.
  • MAIN_MCMC.m: calibrates the eDITH model for all 50 genera with data from all 61 sites. Results from this script are stored in results/all.
  • MAIN_MCMC_subsampling.m: calibrates the eDITH model for all 50 genera with data from subsets of the overall sampling sites. Results from this script are stored in results/subsampling_....

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MATLAB code and data supporting Carraro L, Mächler E, Wüthrich R, Altermatt F. Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems, Nature Communications (accepted), 2020.

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