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πŸ’­
πŸš€ travelling to Mars and back
πŸ’­
πŸš€ travelling to Mars and back

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filipsPL/README.md

β“Ώ Hi there πŸ‘‹

Senior Scientist at IIMCB in Warsaw, with PhD in Organic Chemisty and seven years of experience in Pharma Industry R&D (MedChem and Computer Aided Drug Design). Currently working on data-driven computational methods for RNA-small molecule ligands.

  • Computing since 1988 (Timex)
  • Programming since 1989 (BASIC and logo 🐒)
  • Chemistry since 1990 (water electrolysis)
  • In the internet since 1994 (EARN and Bitnet, gopher and telnet)
  • Linux since kernel 2.0.39 (freesco)
  • Machine learning since 2010 (Decision Trees and KNIME 2.3.0)

❢ Science 🧬

Google Scholar record | orcid: 0000-0001-5758-9416

ⓐ RNA-ligand interactions

  • Binding mode prediction with new scoring function AnnapuRNA. Combination of statistical data extracted from X-ray structures and Machine Learning.
  • RNA-ligand Interaction detection and classification with fingeRNAt.
  • Structural Interaction Fingerprints and Machine Learning for predicting and explaining binding of small molecule ligands to RNA.

β“‘ Protein-ligand interactions & proteins

  • Tox21 challenge - Prediction of Compounds Activity Using ML and Low-Dimensional Molecular Descriptors
  • Predict Protein Stability Index (PSI) from the sequence with ML regression
  • Tox24 challenge - Prediction of Compounds Activity Using ML and Low-Dimensional Molecular Descriptors (2)

❷ After-hours science βš—

  • Indoor cat localization using Bluetooth beacons and Machine Learning 🐱.
  • autowx2 - a set of programs and scripts for schedule satellite and ground recordings with SDR dongle. Bundled plugins include scripts for processing weather APT images from NOAA or METEOR satellites, ISS voice communication recordings, and more πŸ“‘ .
  • Statistics of mass-running events (from 5K to marathons)

❸ Tools πŸ› 

  • Console monitor for mqtt stream, with colors and filters
  • telegraf2rrd - pass data from telegraf to RRD database.

❹ Training materials πŸ“–

  • How to link GitHub repositories with Zenodo to get a DOI and comply with NCN rules
  • Training materials for students of Computer Aided Drug Desing at WUT

Check Markdown links

Pinned Loading

  1. cat-localizer cat-localizer Public

    Localize your cat at home with BLE beacon, ESP32s, and Machine Learning

    Jupyter Notebook 593 30

  2. signals signals Public

    signal processing and todo

    Shell 27 2

  3. autowx2 autowx2 Public

    The program for scheduling recordings and processing of the satellite and ground radio transmissions (like capturing of the weather APT images from NOAA satellites, voice messages from ISS, fixed t…

    Python 78 16

  4. mqtt-monitor mqtt-monitor Public

    pretty print mqtt messages in console

    Python 8

  5. fingernat-ml fingernat-ml Public

    Data accompanying the manuscript on SIFts- and ML-based methods in Virtual Screening for RNA binding ligands.

    5 1

  6. telegraf2rrd telegraf2rrd Public

    Pass data from telegraf to RRD database.

    Shell 1