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Commits on Jan 30, 2023

• removed comments to match formatting

  Bardia-Masudy

  committed
  21e67f9

• reverted to s.count(), cleaned up presentation

  Bardia-Masudy

  committed
  fd988e2

Commits on Jan 23, 2023

• fixed Sequence.gc_iupac, confirmed new functions

  Bardia-Masudy

  committed
  07014f1

• implemented change into __init__ Sequence class

  Bardia-Masudy

  committed
  f773018

Commits on Dec 7, 2022

• fix ResourceWarning: unclosed file

  siebrenf

  authored
  9441a01

Commits on Nov 25, 2022

• fix bgzf test failure with biopython 1.80

  Show description for f4958d1
  emollier

  committed
  f4958d1

Commits on Jul 22, 2022

• Inherit Fasta.filename from Faidx.filename

  mdshw5

  authored
  bee57e7

• Do not call str() on paths

  mdshw5

  authored
  e9a7e70

• Merge branch 'master' into develop

  mdshw5

  authored
  58ec9c0

Commits on Jul 19, 2022

• fix: remove seemingly superfluous import of pysam

  johanneskoester

  authored
  cc7fcd7

Commits on Jun 1, 2022

• fix handling of OpenFile objects for manually provided indexname

  ap--

  committed
  dd56de2

• Add indexname kwarg to Faidx and Fasta

  

  Matt Shirley

  committed
  4c3be94

• remove unused import and capitalize Rewind class

  ap--

  committed
  e9526a0

Commits on May 30, 2022

• fsspec: stat is inconsistent

  ap--

  committed
  7e49531

• implement index file handling

  ap--

  committed
  9bc9a86

• initial fsspec support

  ap--

  committed
  28f9d81

Commits on May 18, 2022

• Handle BED comments

  mdshw5

  authored
  ace74ae

• Allow the bed_split function to skip some lines

  mdshw5

  authored
  039b66e

• Update __init__.py

  mdshw5

  authored
  2c486fc

Commits on Jan 31, 2022

• Merge pull request mdshw5#184 from palao/develop

  Show description for 18993f7
  mdshw5

  authored
  18993f7

• Use setuptools to replace deprecated distutils version comparison

  Show description for 5a81446
  mdshw5

  authored
  5a81446

Commits on Jan 28, 2022

• improvement: pathlib.Path can be passed to Fasta and Faidx

  palao

  committed
  71126a9

Commits on Oct 28, 2021

• Merge pull request mdshw5#180 from lldelisle/variantFastaNonRefChr

  Show description for e5ecb62
  mdshw5

  authored
  e5ecb62

• from pkg_resources import get_distribution

  mdshw5

  authored
  d08e813

• Get __version__ from package distribution

  mdshw5

  authored
  e9dbe96

• Remove version string

  mdshw5

  authored
  2230396

Commits on Oct 20, 2021

• deal with chromosomes not in vcf

  lldelisle

  committed
  d004c82

Commits on Aug 30, 2021

• Update __init__.py

  mdshw5

  authored
  f67ae6c

Commits on Aug 29, 2021

• fix RC

  y9c

  committed
  5d9f262

Commits on Jul 14, 2021

• Missed closing parenthesis

  mdshw5

  authored
  47c1ed8

• Bump version

  mdshw5

  authored
  05787ec

• Extended BED file help text mdshw5#177

  Show description for 7afb0c7
  mdshw5

  authored
  7afb0c7

Commits on Jun 29, 2021

• Remove temporary index on raised FastaIndexingError

  mdshw5

  committed
  9a4c320

• Make index creation atomic (mdshw5#174)

  mdshw5

  committed
  c0e8ba5

Commits on Feb 28, 2021

• Bump version for pypi file name conflict

  mdshw5

  authored
  3a4d405

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