Playbook for configuring Johns Hopkins CMDB laptops, based on https://github.com/i11/mac-dev-playbook
- Dropbox
- Firefox
- Flash Player
- Java 7
- Sublime Text 2
- TextMate
- Text Wrangler
- MacTeX
- R
- RStudio
- gcc-4.8 (needed to compile blast)
- git
- wget
- numpy
- scipy
- matplotlib
- blast
- samtools
- bamtools
- bedtools
- bedops
- bcftools
- vcftools
- htslib
- bwa
- bowtie
- bowtie2
- tophat
- cufflinks
- mummer
- clustal-w
- clustal-omega
- fasta
- fastqc
- hmmer
- igv
- igvtools
- meme
- quast
- lastz
- patsy
- statsmodels
- cython
- ipython
- sympy
- pandas
- pymc
- simpy
- scikit-image
- scikit-learn
- PyX
- macs2