manager.js

Summary

manager.js
bbopx.minerva.manager	jQuery manager for communication with Minerva (via Barista).
Functions
manager	A manager for handling the AJAX and registry.
user_id	DEPRECATED: use user_token()
user_token	Get/set the user token.
get_model	Trigger a rebuild bbopx.barista.response with a model.
get_meta	Trigger meta bbopx.barista.response with a list of all model meta-information.
get_model_undo_redo	Trigger meta bbopx.barista.response of requested model’s undo/redo information.
perform_undo	Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.
perform_redo	Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.
add_fact	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.
remove_fact	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.
add_simple_composite	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.
add_class_expression	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.
remove_class_expression	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.
remove_individual	Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.
add_model	Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.
export_model	[DEPRECATED]
import_model	[DEPRECATED]
store_model	Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.
add_individual_annotation	Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.
add_fact_annotation	Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.
add_model_annotation	Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.
remove_individual_annotation	Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.
remove_fact_annotation	Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.
remove_model_annotation	Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.
capella_bootstrap_model	DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.
request_with	Make a custom request with your own request set.

manager.js

Summary

manager.js
bbopx.minerva.manager	jQuery manager for communication with Minerva (via Barista).
Functions
manager	A manager for handling the AJAX and registry.
user_id	DEPRECATED: use user_token()
user_token	Get/set the user token.
get_model	Trigger a rebuild bbopx.barista.response with a model.
get_meta	Trigger meta bbopx.barista.response with a list of all model meta-information.
get_model_undo_redo	Trigger meta bbopx.barista.response of requested model’s undo/redo information.
perform_undo	Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.
perform_redo	Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.
add_fact	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.
remove_fact	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.
add_simple_composite	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.
add_class_expression	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.
remove_class_expression	Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.
remove_individual	Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.
add_model	Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.
export_model	[DEPRECATED]
import_model	[DEPRECATED]
store_model	Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.
add_individual_evidence	Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.
add_fact_evidence	Trigger a rebuild response bbopx.barista.response on an evidence addition referencing a fact in a model.
remove_evidence	Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.
add_individual_annotation	Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.
add_fact_annotation	Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.
add_model_annotation	Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.
remove_individual_annotation	Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.
remove_fact_annotation	Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.
remove_model_annotation	Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.
capella_bootstrap_model	DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.
request_with	Make a custom request with your own request set.

bbopx.minerva.manager

jQuery manager for communication with Minerva (via Barista).

bbopx.minerva.manager

jQuery manager for communication with Minerva (via Barista).

Functions

@@ -23,49 +23,55 @@

user_token

anchor.user_token = function( user_token )

Get/set the user token.

Arguments

user_token

string

Returns

current user token

get_model

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

Intent: “query”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

get_model

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

Intent: “query”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

get_meta

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

Intent: “query”. Expect: “success” and “meta”.

Arguments

n/a

Returns

n/a

get_meta

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

Intent: “query”. Expect: “success” and “meta”.

Arguments

n/a

Returns

n/a

get_model_undo_redo

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

This will make the request whether or not the user has an okay token defined (as opposed to the helper function _add_undo_redo()).

Intent: “query”. Expect: “success” and “meta”.

Arguments

model_id

string

Returns

n/a

get_model_undo_redo

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

This will make the request whether or not the user has an okay token defined (as opposed to the helper function _add_undo_redo()).

Intent: “query”. Expect: “success” and “meta”.

Arguments

model_id

string

Returns

n/a

perform_undo

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

perform_undo

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

perform_redo

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

perform_redo

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

add_fact

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string

Returns

n/a

add_fact

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string

Returns

n/a

remove_fact

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string

Returns

n/a

remove_fact

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string

Returns

n/a

add_simple_composite

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
cls_exp	anything taken by <bbopx.minerva.class_expression>
enabled_by_expr	[optional] anything taken by <bbopx.minerva.class_expression>
occurs_in_expr	[optional] anything taken by <bbopx.minerva.class_expression>

Returns

n/a

add_simple_composite

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
cls_exp	anything taken by <bbopx.minerva.class_expression>
enabled_by_expr	[optional] anything taken by <bbopx.minerva.class_expression>
occurs_in_expr	[optional] anything taken by <bbopx.minerva.class_expression>

Returns

n/a

add_class_expression

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
individual_id	string
cls_expr	anything acceptible to <bbopx.minerva.class_expression>

Returns

n/a

add_class_expression

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
individual_id	string
cls_expr	anything acceptible to <bbopx.minerva.class_expression>

Returns

n/a

remove_class_expression

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
individual_id	string
cls_expr	anything acceptible to <bbopx.minerva.class_expression>

Returns

n/a

remove_class_expression

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

Intent: “action”. Expect: “success” and “merge”.

Arguments

model_id	string
individual_id	string
cls_expr	anything acceptible to <bbopx.minerva.class_expression>

Returns

n/a

remove_individual

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
individual_id	string

Returns

n/a

remove_individual

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
individual_id	string

Returns

n/a

add_model

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing. Or something!

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

taxon_id	[DEPRECATED] [optional] string (full ncbi)
class_id	[DEPRECATED] [optional] string

Returns

n/a

add_model

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing. Or something!

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

taxon_id	[DEPRECATED] [optional] string (full ncbi)
class_id	[DEPRECATED] [optional] string

Returns

n/a

export_model

anchor.export_model = function( model_id,
format )

[DEPRECATED]

Trigger a meta bbopx.barista.response containing model export text.

Intent: “action”. Expect: “success” and “meta”.

Arguments

model_id	string
format	[optional] string (for legacy, “gaf” or “gpad”)

Returns

n/a

export_model

anchor.export_model = function( model_id,
format )

[DEPRECATED]

Trigger a meta bbopx.barista.response containing model export text.

Intent: “action”. Expect: “success” and “meta”.

Arguments

model_id	string
format	[optional] string (for legacy, “gaf” or “gpad”)

Returns

n/a

import_model

anchor.import_model = function( model_string )

[DEPRECATED]

Trigger a rebuild response bbopx.barista.response for a new model seeded/created from the argument string.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_string

string representation of a model

Returns

n/a

import_model

anchor.import_model = function( model_string )

[DEPRECATED]

Trigger a rebuild response bbopx.barista.response for a new model seeded/created from the argument string.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_string

string representation of a model

Returns

n/a

store_model

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

What?! A “rebuild” and not “meta”? Yes. This allows a workflow where a model is created, edited, and stored all in one pass.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

store_model

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

What?! A “rebuild” and not “meta”? Yes. This allows a workflow where a model is created, edited, and stored all in one pass.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id

string

Returns

n/a

add_individual_annotation

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
indv_id	string
key	string
value	string

Returns

n/a

add_individual_evidence

anchor.add_individual_evidence = function( model_id,
indv_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
indv_id	string
evidence_id	string
source_ids	string or list of strings

Returns

n/a

add_fact_annotation

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string
key	string
value	string

Returns

n/a

add_fact_evidence

anchor.add_fact_evidence = function( model_id,
source_id,
target_id,
rel_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing a fact in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string
evidence_id	string
source_ids	string or list of strings

Returns

n/a

add_model_annotation

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
key	string
value	string

Returns

n/a

remove_evidence

anchor.remove_evidence = function( model_id,
evidence_individual_id )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
evidence_individual_id	string

Returns

n/a

remove_individual_annotation

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
indv_id	string
key	string
value	string

Returns

n/a

add_individual_annotation

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
indv_id	string
key	string
value	string

Returns

n/a

remove_fact_annotation

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string
key	string
value	string

Returns

n/a

add_fact_annotation

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string
key	string
value	string

Returns

n/a

remove_model_annotation

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
key	string
value	string

Returns

n/a

add_model_annotation

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
key	string
value	string

Returns

n/a

capella_bootstrap_model

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

Trigger a rebuild response bbopx.barista.response on attempting to create a new model with information provided by Capella.

If you’re attempting to use this, you probably want to revisit everything and everbody first...

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

bootstrap_obj	JSON object ???
term2aspect	???

Returns

n/a

remove_individual_annotation

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
indv_id	string
key	string
value	string

Returns

n/a

+ +

remove_fact_annotation

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
source_id	string
target_id	string
rel_id	string
key	string
value	string

Returns

n/a

+ +

remove_model_annotation

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

model_id	string
key	string
value	string

Returns

n/a

+ +

capella_bootstrap_model

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

Trigger a rebuild response bbopx.barista.response on attempting to create a new model with information provided by Capella.

If you’re attempting to use this, you probably want to revisit everything and everbody first...

Intent: “action”. Expect: “success” and “rebuild”.

Arguments

bootstrap_obj	JSON object ???
term2aspect	???

Returns

n/a

request_with

anchor.request_with = function( request_set,
model_id )

Make a custom request with your own request set.

Intent: ???

whatever you set Expect: “success” and ??? (depends on your request)

Arguments

request_set	<bbopx.noctua.request_set>
model_id	[TODO?] string

Returns

n/a

@@ -82,7 +88,7 @@ -

bbopx.minerva.manager = function( barista_location,
namespace,
user_token,
engine,
use_jsonp )

A manager for handling the AJAX and registry.

anchor.user_id = function( user_token )

DEPRECATED: use user_token()

anchor.user_token = function( user_token )

Get/set the user token.

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

Generic BBOP handler for dealing with the gross parsing of responses from the GO Molecular Model Manager REST server JSON responses.

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.

anchor.export_model = function( model_id,
format )

[DEPRECATED]

anchor.import_model = function( model_string )

[DEPRECATED]

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

anchor.request_with = function( request_set,
model_id )

Make a custom request with your own request set.

bbopx.minerva.manager = function( barista_location,
namespace,
user_token,
engine,
use_jsonp )

A manager for handling the AJAX and registry.

anchor.user_id = function( user_token )

DEPRECATED: use user_token()

anchor.user_token = function( user_token )

Get/set the user token.

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

Generic BBOP handler for dealing with the gross parsing of responses from the GO Molecular Model Manager REST server JSON responses.

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.

anchor.export_model = function( model_id,
format )

[DEPRECATED]

anchor.import_model = function( model_string )

[DEPRECATED]

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

anchor.add_individual_evidence = function( model_id,
indv_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

anchor.add_fact_evidence = function( model_id,
source_id,
target_id,
rel_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing a fact in a model.

anchor.remove_evidence = function( model_id,
evidence_individual_id )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

anchor.request_with = function( request_set,
model_id )

Make a custom request with your own request set.

diff --git a/docs/files/noctua/edit-js.html b/docs/files/noctua/edit-js.html index c818170..5881594 100644 --- a/docs/files/noctua/edit-js.html +++ b/docs/files/noctua/edit-js.html @@ -1,6 +1,6 @@ -/home/sjcarbon/local/src/git/bbopx-js/lib/bbopx/noctua/edit.js @@ -11,15 +11,23 @@ -

edit.js

Summary

edit.js
Functions
types	Get current types; replace current types.
add_types	Add types to current types.
get_type_by_id	Get the

edit.js

Core edit model.

Unlike the first versions of this, which were very loose, we have a good idea of where we want to go now that we have some experience. Essentially, this will be a subclass of the bbop graph model, but retaining all of the nice mapping and ordering functionality that we’ve gotten used to.

Summary

edit.js	Core edit model.
bbopx.noctua.edit.annotation	Object for keeping track of our annotations.
Functions
annotation	Edit annotations.
id	The unique id of this annotation.
property
types	Get current types; replace current types.
add_types	Add types to current types.
get_type_by_id	Get the

Functions

bbopx.noctua.edit.annotation

Object for keeping track of our annotations.

Summary

Functions
annotation	Edit annotations.
id	The unique id of this annotation.
property
types	Get current types; replace current types.
add_types	Add types to current types.
get_type_by_id	Get the

types

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

Parameters

in_types

[optional] raw JSON type objects

Returns

array

Functions

add_types

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

Parameters

in_types	raw JSON type objects
inferred_p	whether or not the argument types are inferred

Returns

boolean

annotation

bbopx.noctua.edit.annotation = function( kv_set )

Edit annotations. Everything can take annotations.

This structure of the raw key-value set has been updated in the wire protocol. It now looks like:

{"key": "contributor", "value": "GOC:kltm" }

Arguments

kv_set

[optional] a set of keys and values; a simple object

Returns

new instance

get_type_by_id

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

Parameters

type_id

type id

Returns

type or null

id

bbopx.noctua.edit.annotation.prototype.id = function()

The unique id of this annotation.

Parameters

n/a

Returns

string

+ +

property

bbopx.noctua.edit.annotation.prototype.property = function( key,
value )

Parameters

key	string
value	string

Returns

n/a

+ +

types

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

Parameters

in_types

[optional] raw JSON type objects

Returns

array

+ +

add_types

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

Parameters

in_types	raw JSON type objects
inferred_p	whether or not the argument types are inferred

Returns

boolean

+ +

get_type_by_id

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

Parameters

type_id

type id

Returns

type or null

@@ -34,7 +42,7 @@ -

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

bbopx.noctua.edit.annotation = function( kv_set )

Edit annotations.

bbopx.noctua.edit.annotation.prototype.id = function()

The unique id of this annotation.

bbopx.noctua.edit.annotation.prototype.property = function( key,
value )

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

diff --git a/docs/index/Classes.html b/docs/index/Classes.html index 8ade921..1b38b49 100644 --- a/docs/index/Classes.html +++ b/docs/index/Classes.html @@ -11,19 +11,23 @@ -

Class Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

B
	bbopx.barista.client
	bbopx.barista.response
	bbopx.minerva.manager
	bbopx.minerva.request
	bbopx.minerva.request_set
	bbopx.minerva.request_variable
	bbopx.noctua.draggable_canvas
	bbopx.noctua.location-store
	bbopx.noctua.widgets
	bbopx.version
C
	client.js
	context.js
D
	draggable-canvas.js
L
	location-store.js
M
	manager.js
R
	requests.js
	response.js
V
	version.js
W
	widgets.js

Class Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

B
	bbopx.barista.client
	bbopx.barista.response
	bbopx.minerva.manager
	bbopx.minerva.request
	bbopx.minerva.request_set
	bbopx.minerva.request_variable
	bbopx.noctua.draggable_canvas
	bbopx.noctua.edit.annotation
	bbopx.noctua.location-store
	bbopx.noctua.widgets
	bbopx.version
C
	client.js
	context.js
D
	draggable-canvas.js
E
	edit.js
L
	location-store.js
M
	manager.js
R
	requests.js
	response.js
V
	version.js
W
	widgets.js

Let’s try and communicate with the socket.io server (Barista) for messages and the like--client-to-client communication.

Generic BBOP handler for dealing with the gross parsing of responses from the GO Molecular Model Manager REST server JSON responses.

jQuery manager for communication with Minerva (via Barista).

Handle requests to Minerva in a somewhat structured way.

Handle sets of requests and serialize for Minerva call.

Internal usage variable for keeping track of implicit assignToVariable on the client (see Minerva).

Playing with graph area scroll.

Simple abstraction to take care of operating on stored locations.

Namespace for large drawing routines.

This package was automatically generated during the build process and contains its version information--this is the release of the API that you have.

Let’s try and communicate with the socket.io server (Barista) for messages and the like--client-to-client communication.

Generic BBOP handler for dealing with the gross parsing of responses from the GO Molecular Model Manager REST server JSON responses.

jQuery manager for communication with Minerva (via Barista).

Handle requests to Minerva in a somewhat structured way.

Handle sets of requests and serialize for Minerva call.

Internal usage variable for keeping track of implicit assignToVariable on the client (see Minerva).

Playing with graph area scroll.

Object for keeping track of our annotations.

Simple abstraction to take care of operating on stored locations.

Namespace for large drawing routines.

This package was automatically generated during the build process and contains its version information--this is the release of the API that you have.

A handful of functions for drawing entities in different contexts.

+ +

Core edit model.

+ + diff --git a/docs/index/Files.html b/docs/index/Files.html index ee2906f..f635043 100644 --- a/docs/index/Files.html +++ b/docs/index/Files.html @@ -11,11 +11,7 @@ -

File Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

C
	class_expression.js
E
	edit.js

- - - - +

File Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

C
	class_expression.js

diff --git a/docs/index/Functions.html b/docs/index/Functions.html index cac8807..3ceb5d7 100644 --- a/docs/index/Functions.html +++ b/docs/index/Functions.html @@ -11,29 +11,25 @@ -

Function Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

A
	add bbopx.minerva.request_set bbopx.noctua.location-store
	add_annotation, bbopx.minerva.request
	add_annotation_to_fact, bbopx.minerva.request_set
	add_annotation_to_individual, bbopx.minerva.request_set
	add_annotation_to_model, bbopx.minerva.request_set
	add_class_expression bbopx.minerva.manager bbopx.minerva.request
	add_edge_modal, bbopx.noctua.widgets
	add_enode, bbopx.noctua.widgets
	add_evidence, bbopx.minerva.request_set
	add_evidence_to_last_fact, bbopx.minerva.request_set
	add_evidence_to_last_individual, bbopx.minerva.request_set
	add_fact bbopx.minerva.manager bbopx.minerva.request_set
	add_fact_annotation, bbopx.minerva.manager
	add_individual, bbopx.minerva.request_set
	add_individual_annotation, bbopx.minerva.manager
	add_model bbopx.minerva.manager bbopx.minerva.request_set
	add_model_annotation, bbopx.minerva.manager
	add_set_class_expression, bbopx.minerva.request
	add_simple_composite, bbopx.minerva.manager
	add_svf_expression, bbopx.minerva.request
	add_type_to_individual, bbopx.minerva.request_set
	add_types
	annotations bbopx.barista.response bbopx.minerva.request
	as_class
	as_set
	as_svf
B
	build_token_link, bbopx.noctua.widgets
C
	callable, bbopx.minerva.request_set
	capella_bootstrap_model, bbopx.minerva.manager
	category
	clairvoyance, bbopx.barista.client
	class_id
	class_label
	client, bbopx.barista.client
	commentary, bbopx.barista.response
	compute_shield, bbopx.noctua.widgets
	connect, bbopx.barista.client
	contained_modal, bbopx.noctua.widgets
D
	data, bbopx.barista.response
	draggable_canvas, bbopx.noctua.draggable_canvas
E
	edit_annotation_modal, bbopx.noctua.widgets
	edit_node_modal, bbopx.noctua.widgets
	enode_to_stack, bbopx.noctua.widgets
	entity, bbopx.minerva.request
	evidence, bbopx.barista.response
	export, bbopx.barista.response
	export_model, bbopx.minerva.manager
	expressions, bbopx.minerva.request
F
	fact, bbopx.minerva.request
	facts, bbopx.barista.response
	frame

Function Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

A
	add bbopx.minerva.request_set bbopx.noctua.location-store
	add_annotation, bbopx.minerva.request
	add_annotation_to_fact, bbopx.minerva.request_set
	add_annotation_to_individual, bbopx.minerva.request_set
	add_annotation_to_model, bbopx.minerva.request_set
	add_class_expression bbopx.minerva.manager bbopx.minerva.request
	add_edge_modal, bbopx.noctua.widgets
	add_enode, bbopx.noctua.widgets
	add_evidence, bbopx.minerva.request_set
	add_evidence_to_last_fact, bbopx.minerva.request_set
	add_evidence_to_last_individual, bbopx.minerva.request_set
	add_fact bbopx.minerva.manager bbopx.minerva.request_set
	add_fact_annotation, bbopx.minerva.manager
	add_fact_evidence, bbopx.minerva.manager
	add_individual, bbopx.minerva.request_set
	add_individual_annotation, bbopx.minerva.manager
	add_individual_evidence, bbopx.minerva.manager
	add_model bbopx.minerva.manager bbopx.minerva.request_set
	add_model_annotation, bbopx.minerva.manager
	add_set_class_expression, bbopx.minerva.request
	add_simple_composite, bbopx.minerva.manager
	add_svf_expression, bbopx.minerva.request
	add_type_to_individual, bbopx.minerva.request_set
	add_types, bbopx.noctua.edit.annotation
	annotation, bbopx.noctua.edit.annotation
	annotations bbopx.barista.response bbopx.minerva.request
	as_class
	as_set
	as_svf
B
	build_token_link, bbopx.noctua.widgets
C
	callable, bbopx.minerva.request_set
	capella_bootstrap_model, bbopx.minerva.manager
	category
	clairvoyance, bbopx.barista.client
	class_id
	class_label
	client, bbopx.barista.client
	commentary, bbopx.barista.response
	compute_shield, bbopx.noctua.widgets
	connect, bbopx.barista.client
	contained_modal, bbopx.noctua.widgets
D
	data, bbopx.barista.response
	draggable_canvas, bbopx.noctua.draggable_canvas
E
	edit_annotation_modal, bbopx.noctua.widgets
	edit_node_modal, bbopx.noctua.widgets
	enode_to_stack, bbopx.noctua.widgets
	entity, bbopx.minerva.request
	evidence, bbopx.barista.response
	export, bbopx.barista.response
	export_model, bbopx.minerva.manager
	expressions, bbopx.minerva.request

anchor.add = function( req,
intention )

Add a request to the queue.

anchor.add = function( id,
x,
y )

True if new, false if update.

anchor.add_annotation = function( key,
vals )

Add an annotation pair (or series of pairs) to the request.

anchor.add_annotation_to_fact = function( key,
value,
triple,
model_id )

Adds unique key/value set to a fact.

anchor.add_annotation_to_individual = function( key,
value,
individual_id,
model_id )

Adds unique key/value set to an individual.

anchor.add_annotation_to_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

anchor.add_class_expression = function( class_expr )

General use for whatever.

bbopx.noctua.widgets.add_edge_modal = function( ecore,
manager,
relations,
aid,
source_id,
target_id )

Contained shield for creating new edges between nodes.

bbopx.noctua.widgets.add_enode = function( ecore,
enode,
aid,
graph_div )

Add a new enode.

anchor.add_evidence = function( evidence_id,
source_ids,
target_identifier,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s or fact’s annotations to the batch.

anchor.add_evidence_to_last_fact = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the fact’s annotations, as well as a fact of it’s own to the batch.

anchor.add_evidence_to_last_individual = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s annotations, as well as a fact of it’s own to the batch.

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

anchor.add_fact = function( triple,
model_id )

Requests necessary to add an edge between two instances in a model.

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

anchor.add_individual = function( class_expr,
model_id )

Requests necessary to add an instance of with type class to the model.

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.

anchor.add_model = function( argument_hash )

Essentially a wrapper for the “generate” class of model methods.

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

anchor.add_set_class_expression = function( type,
class_expr_list )

Intersections and unions.

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

anchor.add_svf_expression = function( class_expr,
property_id )

Special use.

anchor.add_type_to_individual = function( class_expr,
individual_id,
model_id )

Add the identified type to the individual.

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

bbopx.barista.response.prototype.annotations = function()

Returns a list of the (complex) annotations found in the response.

anchor.annotations = function()

Return list of annotations in request.

bbopx.minerva.class_expression.prototype.as_class = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

bbopx.minerva.class_expression.prototype.as_set = function( set_type,
set_list )

Convert a null class_expression into a set of class expressions.

bbopx.minerva.class_expression.prototype.as_svf = function( class_expr,
property_id )

Convert a null class_expression into an arbitrary SVF.

anchor.add = function( req,
intention )

Add a request to the queue.

anchor.add = function( id,
x,
y )

True if new, false if update.

anchor.add_annotation = function( key,
vals )

Add an annotation pair (or series of pairs) to the request.

anchor.add_annotation_to_fact = function( key,
value,
triple,
model_id )

Adds unique key/value set to a fact.

anchor.add_annotation_to_individual = function( key,
value,
individual_id,
model_id )

Adds unique key/value set to an individual.

anchor.add_annotation_to_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

anchor.add_class_expression = function( class_expr )

General use for whatever.

bbopx.noctua.widgets.add_edge_modal = function( ecore,
manager,
relations,
aid,
source_id,
target_id )

Contained shield for creating new edges between nodes.

bbopx.noctua.widgets.add_enode = function( ecore,
enode,
aid,
graph_div )

Add a new enode.

anchor.add_evidence = function( evidence_id,
source_ids,
target_identifier,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s or fact’s annotations to the batch.

anchor.add_evidence_to_last_fact = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the fact’s annotations, as well as a fact of it’s own to the batch.

anchor.add_evidence_to_last_individual = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s annotations, as well as a fact of it’s own to the batch.

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

anchor.add_fact = function( triple,
model_id )

Requests necessary to add an edge between two instances in a model.

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

anchor.add_fact_evidence = function( model_id,
source_id,
target_id,
rel_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing a fact in a model.

anchor.add_individual = function( class_expr,
model_id )

Requests necessary to add an instance of with type class to the model.

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

anchor.add_individual_evidence = function( model_id,
indv_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.

anchor.add_model = function( argument_hash )

Essentially a wrapper for the “generate” class of model methods.

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

anchor.add_set_class_expression = function( type,
class_expr_list )

Intersections and unions.

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

anchor.add_svf_expression = function( class_expr,
property_id )

Special use.

anchor.add_type_to_individual = function( class_expr,
individual_id,
model_id )

Add the identified type to the individual.

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

bbopx.noctua.edit.annotation = function( kv_set )

Edit annotations.

bbopx.barista.response.prototype.annotations = function()

Returns a list of the (complex) annotations found in the response.

anchor.annotations = function()

Return list of annotations in request.

bbopx.minerva.class_expression.prototype.as_class = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

bbopx.minerva.class_expression.prototype.as_set = function( set_type,
set_list )

Convert a null class_expression into a set of class expressions.

bbopx.minerva.class_expression.prototype.as_svf = function( class_expr,
property_id )

Convert a null class_expression into an arbitrary SVF.

bbopx.noctua.widgets.build_token_link = function( url,
token )

“Static” function.

bbopx.noctua.widgets.build_token_link = function( url,
token )

“Static” function.

anchor.callable = function()

Serialize a request set and the component requests.

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

bbopx.minerva.class_expression.prototype.category = function()

Try to put an instance type into some kind of rendering category.

anchor.clairvoyance = function( top,
left )

Remote awareness of our location.

bbopx.minerva.class_expression.prototype.class_id = function()

The considered class id.

bbopx.minerva.class_expression.prototype.class_label = function()

The considered class label, defaults to ID if not found.

bbopx.barista.client = function( barista_location,
token )

Registry for client-to-client communication via Barista.

bbopx.barista.response.prototype.commentary = function()

Returns the commentary object (whatever that might be in any given case).

bbopx.noctua.widgets.compute_shield = function()

Contained blocking shield for general compute activity.

anchor.connect = function( model_id )

Required call before using messenger.

bbopx.noctua.widgets.contained_modal = function( type,
arg_title,
arg_body )

Object.

anchor.callable = function()

Serialize a request set and the component requests.

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

bbopx.minerva.class_expression.prototype.category = function()

Try to put an instance type into some kind of rendering category.

anchor.clairvoyance = function( top,
left )

Remote awareness of our location.

bbopx.minerva.class_expression.prototype.class_id = function()

The considered class id.

bbopx.minerva.class_expression.prototype.class_label = function()

The considered class label, defaults to ID if not found.

bbopx.barista.client = function( barista_location,
token )

Registry for client-to-client communication via Barista.

bbopx.barista.response.prototype.commentary = function()

Returns the commentary object (whatever that might be in any given case).

bbopx.noctua.widgets.compute_shield = function()

Contained blocking shield for general compute activity.

anchor.connect = function( model_id )

Required call before using messenger.

bbopx.noctua.widgets.contained_modal = function( type,
arg_title,
arg_body )

Object.

bbopx.barista.response.prototype.data = function()

Returns the data object (whatever that might be in any given case).

bbopx.noctua.draggable_canvas = function( container_id )

Make the div a draggable canvas.

bbopx.barista.response.prototype.data = function()

Returns the data object (whatever that might be in any given case).

bbopx.noctua.draggable_canvas = function( container_id )

Make the div a draggable canvas.

Contained shield for generically editing the annotations of an identifier entity.

bbopx.noctua.widgets.edit_node_modal = function( ecore,
manager,
enode,
relations,
aid,
gserv,
gconf )

Contained shield for editing the properties of a node (including deletion).

bbopx.noctua.widgets.enode_to_stack = function( enode,
aid )

Takes a core edit node as the argument, categorize the contained types, order them.

anchor.entity = function()

The specified entity string.

bbopx.barista.response.prototype.evidence = function()

Returns a list of the evidence found in the response.

bbopx.barista.response.prototype.export_model = function()

Returns the string of the export found in the return.

anchor.export_model = function( model_id,
format )

[DEPRECATED]

anchor.expressions = function()

Return list of expressions in request.

- - - -

anchor.fact = function( sub,
obj,
pred )

Add a fact to the request.

bbopx.barista.response.prototype.facts = function()

Returns a list of the facts in the response.

bbopx.minerva.class_expression.prototype.frame = function()

If the type has a recursive frame, a list of the types it contains.

Contained shield for generically editing the annotations of an identifier entity.

bbopx.noctua.widgets.edit_node_modal = function( ecore,
manager,
enode,
relations,
aid,
gserv,
gconf )

Contained shield for editing the properties of a node (including deletion).

bbopx.noctua.widgets.enode_to_stack = function( enode,
aid )

Takes a core edit node as the argument, categorize the contained types, order them.

anchor.entity = function()

The specified entity string.

bbopx.barista.response.prototype.evidence = function()

Returns a list of the evidence found in the response.

bbopx.barista.response.prototype.export_model = function()

Returns the string of the export found in the return.

anchor.export_model = function( model_id,
format )

[DEPRECATED]

anchor.expressions = function()

Return list of expressions in request.

diff --git a/docs/index/Functions2.html b/docs/index/Functions2.html index 6d0418e..c318042 100644 --- a/docs/index/Functions2.html +++ b/docs/index/Functions2.html @@ -11,41 +11,45 @@ -

Function Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

G
	get, bbopx.noctua.location-store
	get_layout, bbopx.barista.client
	get_meta bbopx.minerva.manager bbopx.minerva.request_set
	get_model bbopx.minerva.manager bbopx.minerva.request_set
	get_model_undo_redo, bbopx.minerva.manager
	get_type_by_id
	get_undo_redo, bbopx.minerva.request_set
H
	has_redo_p, bbopx.barista.response
	has_undo_p, bbopx.barista.response
I
	id
	import_model, bbopx.minerva.manager
	inconsistent_p, bbopx.barista.response
	individual, bbopx.minerva.request
	individuals, bbopx.barista.response
	inferred_individuals, bbopx.barista.response
	inferred_p
	intention, bbopx.barista.response
L
	last_fact_triple, bbopx.minerva.request_set
	last_individual_id, bbopx.minerva.request_set
	location_store, bbopx.noctua.location-store
M
	manager, bbopx.minerva.manager
	message, bbopx.barista.client
	model, bbopx.minerva.request
	model_id, bbopx.barista.response
	model_ids, bbopx.barista.response
	models_meta, bbopx.barista.response
N
	nested_p
O
	object, bbopx.minerva.request
	objectify, bbopx.minerva.request
	okay, bbopx.barista.client
P
	packet_id, bbopx.barista.response
	parse
	perform_redo, bbopx.minerva.manager
	perform_undo, bbopx.minerva.manager
	predicate, bbopx.minerva.request
	properties, bbopx.barista.response
	property_id
	property_label
Q
	query, bbopx.barista.client

Function Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

F
	fact, bbopx.minerva.request
	facts, bbopx.barista.response
	frame
G
	get, bbopx.noctua.location-store
	get_layout, bbopx.barista.client
	get_meta bbopx.minerva.manager bbopx.minerva.request_set
	get_model bbopx.minerva.manager bbopx.minerva.request_set
	get_model_undo_redo, bbopx.minerva.manager
	get_type_by_id, bbopx.noctua.edit.annotation
	get_undo_redo, bbopx.minerva.request_set
H
	has_redo_p, bbopx.barista.response
	has_undo_p, bbopx.barista.response
I
	id Global bbopx.noctua.edit.annotation
	import_model, bbopx.minerva.manager
	inconsistent_p, bbopx.barista.response
	individual, bbopx.minerva.request
	individuals, bbopx.barista.response
	inferred_individuals, bbopx.barista.response
	inferred_p
	intention, bbopx.barista.response
L
	last_fact_triple, bbopx.minerva.request_set
	last_individual_id, bbopx.minerva.request_set
	location_store, bbopx.noctua.location-store
M
	manager, bbopx.minerva.manager
	message, bbopx.barista.client
	model, bbopx.minerva.request
	model_id, bbopx.barista.response
	model_ids, bbopx.barista.response
	models_meta, bbopx.barista.response
N
	nested_p
O
	object, bbopx.minerva.request
	objectify, bbopx.minerva.request
	okay, bbopx.barista.client
P
	packet_id, bbopx.barista.response
	parse
	perform_redo, bbopx.minerva.manager
	perform_undo, bbopx.minerva.manager
	predicate, bbopx.minerva.request
	properties, bbopx.barista.response
	property, bbopx.noctua.edit.annotation
	property_id
	property_label
Q
	query, bbopx.barista.client

anchor.get = function( id )

Get x/y coord of id.

anchor.get_layout = function()

Wrapper for the only thing query is currently used for.

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

anchor.get_meta = function()

Essentially, get the list of relations.

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

anchor.get_model = function( model_id )

The the state of a model.

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

anchor.get_undo_redo = function( model_id )

Get the current undo/redo information for a model.

anchor.fact = function( sub,
obj,
pred )

Add a fact to the request.

bbopx.barista.response.prototype.facts = function()

Returns a list of the facts in the response.

bbopx.minerva.class_expression.prototype.frame = function()

If the type has a recursive frame, a list of the types it contains.

bbopx.barista.response.prototype.has_redo_p = function()

Returns a true or false depending on the existence a redo list.

bbopx.barista.response.prototype.has_undo_p = function()

Returns a true or false depending on the existence an undo list.

anchor.get = function( id )

Get x/y coord of id.

anchor.get_layout = function()

Wrapper for the only thing query is currently used for.

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

anchor.get_meta = function()

Essentially, get the list of relations.

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

anchor.get_model = function( model_id )

The the state of a model.

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

anchor.get_undo_redo = function( model_id )

Get the current undo/redo information for a model.

bbopx.minerva.class_expression.prototype.id = function()

n/a

anchor.import_model = function( model_string )

[DEPRECATED]

bbopx.barista.response.prototype.inconsistent_p = function()

Returns true or false on whether or not the returned model is thought to be inconsistent.

anchor.individual = function( ind_id )

Get/set the instance of this request.

bbopx.barista.response.prototype.individuals = function()

Returns a list of the individuals in the response.

bbopx.barista.response.prototype.inferred_individuals = function()

Returns a list of the inferred_individuals in the response.

bbopx.minerva.class_expression.prototype.inferred_p = function()

n/a

bbopx.barista.response.prototype.intention = function()

Returns the user intention for a call.

bbopx.barista.response.prototype.has_redo_p = function()

Returns a true or false depending on the existence a redo list.

bbopx.barista.response.prototype.has_undo_p = function()

Returns a true or false depending on the existence an undo list.

anchor.last_fact_triple = function( number_to_skip )

In our model, facts are anonymous (do not have an ID) and need to be referred to by their unique triple: subject id, object id, and predicate (edge type) id.

anchor.last_individual_id = function( number_to_skip )

Return the ID of the last individual identified in a call (implicitly or explicitly).

bbopx.noctua.location_store = function()

Object to track object locations.

bbopx.minerva.class_expression.prototype.id = function()

n/a

bbopx.noctua.edit.annotation.prototype.id = function()

The unique id of this annotation.

anchor.import_model = function( model_string )

[DEPRECATED]

bbopx.barista.response.prototype.inconsistent_p = function()

Returns true or false on whether or not the returned model is thought to be inconsistent.

anchor.individual = function( ind_id )

Get/set the instance of this request.

bbopx.barista.response.prototype.individuals = function()

Returns a list of the individuals in the response.

bbopx.barista.response.prototype.inferred_individuals = function()

Returns a list of the inferred_individuals in the response.

bbopx.minerva.class_expression.prototype.inferred_p = function()

n/a

bbopx.barista.response.prototype.intention = function()

Returns the user intention for a call.

bbopx.minerva.manager = function( barista_location,
namespace,
user_token,
engine,
use_jsonp )

A manager for handling the AJAX and registry.

anchor.message = function( m )

Just a message.

anchor.model = function( model )

Get/set the topic model of this request.

bbopx.barista.response.prototype.model_id = function()

Returns the model id of the response.

bbopx.barista.response.prototype.model_ids = function()

Returns a list the model ids found in the response.

bbopx.barista.response.prototype.models_meta = function()

Returns a hash of the model ids to models properties found in the response.

anchor.last_fact_triple = function( number_to_skip )

In our model, facts are anonymous (do not have an ID) and need to be referred to by their unique triple: subject id, object id, and predicate (edge type) id.

anchor.last_individual_id = function( number_to_skip )

Return the ID of the last individual identified in a call (implicitly or explicitly).

bbopx.noctua.location_store = function()

Object to track object locations.

bbopx.minerva.class_expression.prototype.nested_p = function()

If the type has a recursive frame.

bbopx.minerva.manager = function( barista_location,
namespace,
user_token,
engine,
use_jsonp )

A manager for handling the AJAX and registry.

anchor.message = function( m )

Just a message.

anchor.model = function( model )

Get/set the topic model of this request.

bbopx.barista.response.prototype.model_id = function()

Returns the model id of the response.

bbopx.barista.response.prototype.model_ids = function()

Returns a list the model ids found in the response.

bbopx.barista.response.prototype.models_meta = function()

Returns a hash of the model ids to models properties found in the response.

anchor.object = function( obj )

Get/set the object of this request.

anchor.objectify = function()

Should only be used in the context of making a request set.

anchor.okay = function()

bbopx.minerva.class_expression.prototype.nested_p = function()

If the type has a recursive frame.

bbopx.barista.response.prototype.packet_id = function()

Returns the response’s unique id.

bbopx.minerva.class_expression.prototype.parse = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

anchor.predicate = function( pred )

Get/set the predicate of this request.

bbopx.barista.response.prototype.properties = function()

Returns a list of the properties in the response.

bbopx.minerva.class_expression.prototype.property_id = function()

The considered class property id.

bbopx.minerva.class_expression.prototype.property_label = function()

The considered class property label.

anchor.object = function( obj )

Get/set the object of this request.

anchor.objectify = function()

Should only be used in the context of making a request set.

anchor.okay = function()

anchor.query = function( query_class,
data )

General structure for requesting information from Barista about things it might know.

bbopx.barista.response.prototype.packet_id = function()

Returns the response’s unique id.

bbopx.minerva.class_expression.prototype.parse = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

anchor.predicate = function( pred )

Get/set the predicate of this request.

bbopx.barista.response.prototype.properties = function()

Returns a list of the properties in the response.

bbopx.noctua.edit.annotation.prototype.property = function( key,
value )

bbopx.minerva.class_expression.prototype.property_id = function()

The considered class property id.

bbopx.minerva.class_expression.prototype.property_label = function()

The considered class property label.

+ + + +

anchor.query = function( query_class,
data )

General structure for requesting information from Barista about things it might know.

diff --git a/docs/index/Functions3.html b/docs/index/Functions3.html index 468b5e6..34428fb 100644 --- a/docs/index/Functions3.html +++ b/docs/index/Functions3.html @@ -11,29 +11,29 @@ -

Function Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

R
	redo_last_model_batch, bbopx.minerva.request_set
	relations, bbopx.barista.response
	relay, bbopx.barista.client
	remove, bbopx.noctua.location-store
	remove_annotation_from_fact, bbopx.minerva.request_set
	remove_annotation_from_individual, bbopx.minerva.request_set
	remove_annotation_from_model, bbopx.minerva.request_set
	remove_class_expression, bbopx.minerva.manager
	remove_evidence, bbopx.minerva.request_set
	remove_fact bbopx.minerva.manager bbopx.minerva.request_set
	remove_fact_annotation, bbopx.minerva.manager
	remove_individual bbopx.minerva.manager bbopx.minerva.request_set
	remove_individual_annotation, bbopx.minerva.manager
	remove_model_annotation, bbopx.minerva.manager
	remove_type_from_individual, bbopx.minerva.request_set
	render_node_stack, bbopx.noctua.widgets
	repaint_edge_table, bbopx.noctua.widgets
	repaint_exp_table, bbopx.noctua.widgets
	repaint_info, bbopx.noctua.widgets
	reporter, bbopx.noctua.widgets
	request, bbopx.minerva.request
	request_set, bbopx.minerva.request_set
	request_variable, bbopx.minerva.request_variable
	request_with, bbopx.minerva.manager
	response, bbopx.barista.response
S
	set_p, bbopx.minerva.request_variable
	signal, bbopx.barista.response
	signature
	sorted_relation_list, bbopx.noctua.widgets
	special, bbopx.minerva.request
	store_model bbopx.minerva.manager bbopx.minerva.request_set
	structure Global bbopx.minerva.request_set
	subject, bbopx.minerva.request
	svf_class_expression
T
	telekinesis, bbopx.barista.client
	token, bbopx.barista.client
	type
	type_to_full, context.js
	type_to_minimal, context.js
	type_to_span, context.js
	types
U
	undo_last_model_batch, bbopx.minerva.request_set
	update_enode, bbopx.noctua.widgets
	user_check, bbopx.noctua.widgets
	user_id bbopx.barista.response bbopx.minerva.manager
	user_token, bbopx.minerva.manager
V
	value, bbopx.minerva.request_variable
W
	wipe, bbopx.noctua.widgets

Function Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

R
	redo_last_model_batch, bbopx.minerva.request_set
	relations, bbopx.barista.response
	relay, bbopx.barista.client
	remove, bbopx.noctua.location-store
	remove_annotation_from_fact, bbopx.minerva.request_set
	remove_annotation_from_individual, bbopx.minerva.request_set
	remove_annotation_from_model, bbopx.minerva.request_set
	remove_class_expression, bbopx.minerva.manager
	remove_evidence bbopx.minerva.manager bbopx.minerva.request_set
	remove_fact bbopx.minerva.manager bbopx.minerva.request_set
	remove_fact_annotation, bbopx.minerva.manager
	remove_individual bbopx.minerva.manager bbopx.minerva.request_set
	remove_individual_annotation, bbopx.minerva.manager
	remove_model_annotation, bbopx.minerva.manager
	remove_type_from_individual, bbopx.minerva.request_set
	render_node_stack, bbopx.noctua.widgets
	repaint_edge_table, bbopx.noctua.widgets
	repaint_exp_table, bbopx.noctua.widgets
	repaint_info, bbopx.noctua.widgets
	reporter, bbopx.noctua.widgets
	request, bbopx.minerva.request
	request_set, bbopx.minerva.request_set
	request_variable, bbopx.minerva.request_variable
	request_with, bbopx.minerva.manager
	response, bbopx.barista.response
S
	set_p, bbopx.minerva.request_variable
	signal, bbopx.barista.response
	signature
	sorted_relation_list, bbopx.noctua.widgets
	special, bbopx.minerva.request
	store_model bbopx.minerva.manager bbopx.minerva.request_set
	structure Global bbopx.minerva.request_set
	subject, bbopx.minerva.request
	svf_class_expression
T
	telekinesis, bbopx.barista.client
	token, bbopx.barista.client
	type
	type_to_full, context.js
	type_to_minimal, context.js
	type_to_span, context.js
	types, bbopx.noctua.edit.annotation
U
	undo_last_model_batch, bbopx.minerva.request_set
	update_enode, bbopx.noctua.widgets
	user_check, bbopx.noctua.widgets
	user_id bbopx.barista.response bbopx.minerva.manager
	user_token, bbopx.minerva.manager
V
	value, bbopx.minerva.request_variable
W
	wipe, bbopx.noctua.widgets

anchor.redo_last_model_batch = function( model_id )

Redo the last batch of operations performed on the model.

bbopx.barista.response.prototype.relations = function()

Returns a list of the relations found in the response.

anchor.relay = function( relay_class,
data )

General structure for relaying information between clients.

anchor.remove = function( id )

True is removal, false if wasn’t there.

anchor.remove_annotation_from_fact = function( key,
value,
triple,
model_id )

Removes unique key/value set from a fact.

anchor.remove_annotation_from_individual = function( key,
value,
individual_id,
model_id )

Removes unique key/value set from an individual.

anchor.remove_annotation_from_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

anchor.remove_evidence = function( evidence_individual_id,
model_id )

Remove an evidence annotation from an individual or edge.

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

anchor.remove_fact = function( triple,
model_id )

Requests necessary to remove an edge between two instances in a model.

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

anchor.remove_individual = function( individual_id,
model_id )

Requests necessary to remove an individual.

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

anchor.remove_type_from_individual = function( class_expr,
individual_id,
model_id )

Remove the identified type from the individual.

bbopx.noctua.widgets.render_node_stack = function( enode,
aid )

???

bbopx.noctua.widgets.repaint_edge_table = function( ecore,
aid,
table_div )

Add edit model edge contents to a descriptive table.

bbopx.noctua.widgets.repaint_exp_table = function( ecore,
aid,
table_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.repaint_info = function( ecore,
aid,
info_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.reporter = function( output_id )

Object.

bbopx.minerva.request = function( entity,
operation )

Contructor for a Minerva request item.

bbopx.minerva.request_set = function( user_token,
model_id )

Constructor for a Minerva request item set.

bbopx.minerva.request_variable = function( varvalue )

Contructor for a request variable, used to relate references during a request.

anchor.request_with = function( request_set,
model_id )

Make a custom request with your own request set.

bbopx.barista.response = function( raw )

Contructor for a Minerva REST JSON response object.

anchor.redo_last_model_batch = function( model_id )

Redo the last batch of operations performed on the model.

bbopx.barista.response.prototype.relations = function()

Returns a list of the relations found in the response.

anchor.relay = function( relay_class,
data )

General structure for relaying information between clients.

anchor.remove = function( id )

True is removal, false if wasn’t there.

anchor.remove_annotation_from_fact = function( key,
value,
triple,
model_id )

Removes unique key/value set from a fact.

anchor.remove_annotation_from_individual = function( key,
value,
individual_id,
model_id )

Removes unique key/value set from an individual.

anchor.remove_annotation_from_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

anchor.remove_evidence = function( model_id,
evidence_individual_id )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

anchor.remove_evidence = function( evidence_individual_id,
model_id )

Remove an evidence annotation from an individual or edge.

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

anchor.remove_fact = function( triple,
model_id )

Requests necessary to remove an edge between two instances in a model.

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

anchor.remove_individual = function( individual_id,
model_id )

Requests necessary to remove an individual.

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

anchor.remove_type_from_individual = function( class_expr,
individual_id,
model_id )

Remove the identified type from the individual.

bbopx.noctua.widgets.render_node_stack = function( enode,
aid )

???

bbopx.noctua.widgets.repaint_edge_table = function( ecore,
aid,
table_div )

Add edit model edge contents to a descriptive table.

bbopx.noctua.widgets.repaint_exp_table = function( ecore,
aid,
table_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.repaint_info = function( ecore,
aid,
info_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.reporter = function( output_id )

Object.

bbopx.minerva.request = function( entity,
operation )

Contructor for a Minerva request item.

bbopx.minerva.request_set = function( user_token,
model_id )

Constructor for a Minerva request item set.

bbopx.minerva.request_variable = function( varvalue )

Contructor for a request variable, used to relate references during a request.

anchor.request_with = function( request_set,
model_id )

Make a custom request with your own request set.

bbopx.barista.response = function( raw )

Contructor for a Minerva REST JSON response object.

anchor.set_p = function()

Returns true or false on whether or not the user changed the value of the setting.

bbopx.barista.response.prototype.signal = function()

Returns the server’s action signal, if there was one.

bbopx.minerva.class_expression.prototype.signature = function()

A cheap way of identifying if two class_expressions are the same.

bbopx.noctua.widgets.sorted_relation_list = function( relations,
aid )

Function that returns a sorted relation list of the form [[id, label], ...]

anchor.special = function( name,
val )

Add a “special” variable to the request.

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

anchor.store_model = function( model_id )

Store the model to the model store (file on disk as of this writing, but may change soon).

bbopx.minerva.class_expression.prototype.structure = function()

Hm.

anchor.structure = function()

Create the JSON object that will be passed to the Minerva server.

anchor.subject = function( sub )

Get/set the subject of this request.

bbopx.minerva.class_expression.prototype.svf_class_expression = function()

The class expression when we are dealing with SVF.

anchor.set_p = function()

Returns true or false on whether or not the user changed the value of the setting.

bbopx.barista.response.prototype.signal = function()

Returns the server’s action signal, if there was one.

bbopx.minerva.class_expression.prototype.signature = function()

A cheap way of identifying if two class_expressions are the same.

bbopx.noctua.widgets.sorted_relation_list = function( relations,
aid )

Function that returns a sorted relation list of the form [[id, label], ...]

anchor.special = function( name,
val )

Add a “special” variable to the request.

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

anchor.store_model = function( model_id )

Store the model to the model store (file on disk as of this writing, but may change soon).

bbopx.minerva.class_expression.prototype.structure = function()

Hm.

anchor.structure = function()

Create the JSON object that will be passed to the Minerva server.

anchor.subject = function( sub )

Get/set the subject of this request.

bbopx.minerva.class_expression.prototype.svf_class_expression = function()

The class expression when we are dealing with SVF.

anchor.telekinesis = function( item_id,
top,
left )

Move objects at a distance.

anchor.token = function( in_token )

Operate on your identifying token.

bbopx.minerva.class_expression.prototype.type = function()

The “type” of the type.

bbopx.noctua.type_to_full = function( in_type,
aid )

A recursive writer for when we no longer care--a table that goes on and on...

bbopx.noctua.type_to_minimal = function( in_type,
aid )

Return a single-line text-only one-level representation of a type.

bbopx.noctua.type_to_span = function( in_type,
aid,
color_p )

Essentially, minimal rendered as a usable span, with a color option.

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

anchor.telekinesis = function( item_id,
top,
left )

Move objects at a distance.

anchor.token = function( in_token )

Operate on your identifying token.

bbopx.minerva.class_expression.prototype.type = function()

The “type” of the type.

bbopx.noctua.type_to_full = function( in_type,
aid )

A recursive writer for when we no longer care--a table that goes on and on...

bbopx.noctua.type_to_minimal = function( in_type,
aid )

Return a single-line text-only one-level representation of a type.

bbopx.noctua.type_to_span = function( in_type,
aid,
color_p )

Essentially, minimal rendered as a usable span, with a color option.

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

anchor.undo_last_model_batch = function( model_id )

Undo the last batch of operations performed on the model.

bbopx.noctua.widgets.update_enode = function( ecore,
enode,
aid )

Update the displayed contents of an enode.

bbopx.noctua.widgets.user_check = function( barista_loc,
given_token,
div_id )

Given a token, either report a bad token ot

bbopx.barista.response.prototype.user_id = function()

Returns the user id (uid) for a call if it was generated my a known user.

anchor.user_id = function( user_token )

DEPRECATED: use user_token()

anchor.user_token = function( user_token )

Get/set the user token.

anchor.undo_last_model_batch = function( model_id )

Undo the last batch of operations performed on the model.

bbopx.noctua.widgets.update_enode = function( ecore,
enode,
aid )

Update the displayed contents of an enode.

bbopx.noctua.widgets.user_check = function( barista_loc,
given_token,
div_id )

Given a token, either report a bad token ot

bbopx.barista.response.prototype.user_id = function()

Returns the user id (uid) for a call if it was generated my a known user.

anchor.user_id = function( user_token )

DEPRECATED: use user_token()

anchor.user_token = function( user_token )

Get/set the user token.

The value of the variable to be used.

bbopx.noctua.widgets.wipe = function( div )

Wipe out the contents of a jQuery-identified div.

bbopx.noctua.widgets.wipe = function( div )

Wipe out the contents of a jQuery-identified div.

diff --git a/docs/index/General.html b/docs/index/General.html index 1e4d609..7ca105e 100644 --- a/docs/index/General.html +++ b/docs/index/General.html @@ -11,21 +11,21 @@ -

Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

A
	add bbopx.minerva.request_set bbopx.noctua.location-store
	add_annotation, bbopx.minerva.request
	add_annotation_to_fact, bbopx.minerva.request_set
	add_annotation_to_individual, bbopx.minerva.request_set
	add_annotation_to_model, bbopx.minerva.request_set
	add_class_expression bbopx.minerva.manager bbopx.minerva.request
	add_edge_modal, bbopx.noctua.widgets
	add_enode, bbopx.noctua.widgets
	add_evidence, bbopx.minerva.request_set
	add_evidence_to_last_fact, bbopx.minerva.request_set
	add_evidence_to_last_individual, bbopx.minerva.request_set
	add_fact bbopx.minerva.manager bbopx.minerva.request_set
	add_fact_annotation, bbopx.minerva.manager
	add_individual, bbopx.minerva.request_set
	add_individual_annotation, bbopx.minerva.manager
	add_model bbopx.minerva.manager bbopx.minerva.request_set
	add_model_annotation, bbopx.minerva.manager
	add_set_class_expression, bbopx.minerva.request
	add_simple_composite, bbopx.minerva.manager
	add_svf_expression, bbopx.minerva.request
	add_type_to_individual, bbopx.minerva.request_set
	add_types
	annotations bbopx.barista.response bbopx.minerva.request
	as_class
	as_set
	as_svf
B
	bbopx.barista.client
	bbopx.barista.response
	bbopx.minerva.manager
	bbopx.minerva.request
	bbopx.minerva.request_set
	bbopx.minerva.request_variable
	bbopx.noctua.draggable_canvas
	bbopx.noctua.location-store
	bbopx.noctua.widgets
	bbopx.version
	build_token_link, bbopx.noctua.widgets
C
	callable, bbopx.minerva.request_set
	capella_bootstrap_model, bbopx.minerva.manager
	category
	clairvoyance, bbopx.barista.client
	class_expression.js
	class_id
	class_label
	client, bbopx.barista.client
	client.js
	commentary, bbopx.barista.response
	compute_shield, bbopx.noctua.widgets
	connect, bbopx.barista.client
	contained_modal, bbopx.noctua.widgets
	context.js
D
	data, bbopx.barista.response
	draggable-canvas.js
	draggable_canvas, bbopx.noctua.draggable_canvas

Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

A
	add bbopx.minerva.request_set bbopx.noctua.location-store
	add_annotation, bbopx.minerva.request
	add_annotation_to_fact, bbopx.minerva.request_set
	add_annotation_to_individual, bbopx.minerva.request_set
	add_annotation_to_model, bbopx.minerva.request_set
	add_class_expression bbopx.minerva.manager bbopx.minerva.request
	add_edge_modal, bbopx.noctua.widgets
	add_enode, bbopx.noctua.widgets
	add_evidence, bbopx.minerva.request_set
	add_evidence_to_last_fact, bbopx.minerva.request_set
	add_evidence_to_last_individual, bbopx.minerva.request_set
	add_fact bbopx.minerva.manager bbopx.minerva.request_set
	add_fact_annotation, bbopx.minerva.manager
	add_fact_evidence, bbopx.minerva.manager
	add_individual, bbopx.minerva.request_set
	add_individual_annotation, bbopx.minerva.manager
	add_individual_evidence, bbopx.minerva.manager
	add_model bbopx.minerva.manager bbopx.minerva.request_set
	add_model_annotation, bbopx.minerva.manager
	add_set_class_expression, bbopx.minerva.request
	add_simple_composite, bbopx.minerva.manager
	add_svf_expression, bbopx.minerva.request
	add_type_to_individual, bbopx.minerva.request_set
	add_types, bbopx.noctua.edit.annotation
	annotation, bbopx.noctua.edit.annotation
	annotations bbopx.barista.response bbopx.minerva.request
	as_class
	as_set
	as_svf
B
	bbopx.barista.client
	bbopx.barista.response
	bbopx.minerva.manager
	bbopx.minerva.request
	bbopx.minerva.request_set
	bbopx.minerva.request_variable
	bbopx.noctua.draggable_canvas
	bbopx.noctua.edit.annotation
	bbopx.noctua.location-store
	bbopx.noctua.widgets
	bbopx.version
	build_token_link, bbopx.noctua.widgets
C
	callable, bbopx.minerva.request_set
	capella_bootstrap_model, bbopx.minerva.manager
	category
	clairvoyance, bbopx.barista.client
	class_expression.js
	class_id
	class_label
	client, bbopx.barista.client
	client.js
	commentary, bbopx.barista.response
	compute_shield, bbopx.noctua.widgets
	connect, bbopx.barista.client
	contained_modal, bbopx.noctua.widgets
	context.js
D
	data, bbopx.barista.response
	draggable-canvas.js
	draggable_canvas, bbopx.noctua.draggable_canvas

anchor.add = function( req,
intention )

Add a request to the queue.

anchor.add = function( id,
x,
y )

True if new, false if update.

anchor.add_annotation = function( key,
vals )

Add an annotation pair (or series of pairs) to the request.

anchor.add_annotation_to_fact = function( key,
value,
triple,
model_id )

Adds unique key/value set to a fact.

anchor.add_annotation_to_individual = function( key,
value,
individual_id,
model_id )

Adds unique key/value set to an individual.

anchor.add_annotation_to_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

anchor.add_class_expression = function( class_expr )

General use for whatever.

bbopx.noctua.widgets.add_edge_modal = function( ecore,
manager,
relations,
aid,
source_id,
target_id )

Contained shield for creating new edges between nodes.

bbopx.noctua.widgets.add_enode = function( ecore,
enode,
aid,
graph_div )

Add a new enode.

anchor.add_evidence = function( evidence_id,
source_ids,
target_identifier,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s or fact’s annotations to the batch.

anchor.add_evidence_to_last_fact = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the fact’s annotations, as well as a fact of it’s own to the batch.

anchor.add_evidence_to_last_individual = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s annotations, as well as a fact of it’s own to the batch.

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

anchor.add_fact = function( triple,
model_id )

Requests necessary to add an edge between two instances in a model.

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

anchor.add_individual = function( class_expr,
model_id )

Requests necessary to add an instance of with type class to the model.

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.

anchor.add_model = function( argument_hash )

Essentially a wrapper for the “generate” class of model methods.

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

anchor.add_set_class_expression = function( type,
class_expr_list )

Intersections and unions.

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

anchor.add_svf_expression = function( class_expr,
property_id )

Special use.

anchor.add_type_to_individual = function( class_expr,
individual_id,
model_id )

Add the identified type to the individual.

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

bbopx.barista.response.prototype.annotations = function()

Returns a list of the (complex) annotations found in the response.

anchor.annotations = function()

Return list of annotations in request.

bbopx.minerva.class_expression.prototype.as_class = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

bbopx.minerva.class_expression.prototype.as_set = function( set_type,
set_list )

Convert a null class_expression into a set of class expressions.

bbopx.minerva.class_expression.prototype.as_svf = function( class_expr,
property_id )

Convert a null class_expression into an arbitrary SVF.

anchor.add = function( req,
intention )

Add a request to the queue.

anchor.add = function( id,
x,
y )

True if new, false if update.

anchor.add_annotation = function( key,
vals )

Add an annotation pair (or series of pairs) to the request.

anchor.add_annotation_to_fact = function( key,
value,
triple,
model_id )

Adds unique key/value set to a fact.

anchor.add_annotation_to_individual = function( key,
value,
individual_id,
model_id )

Adds unique key/value set to an individual.

anchor.add_annotation_to_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.add_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a complex class expression to an individual in a model.

anchor.add_class_expression = function( class_expr )

General use for whatever.

bbopx.noctua.widgets.add_edge_modal = function( ecore,
manager,
relations,
aid,
source_id,
target_id )

Contained shield for creating new edges between nodes.

bbopx.noctua.widgets.add_enode = function( ecore,
enode,
aid,
graph_div )

Add a new enode.

anchor.add_evidence = function( evidence_id,
source_ids,
target_identifier,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s or fact’s annotations to the batch.

anchor.add_evidence_to_last_fact = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the fact’s annotations, as well as a fact of it’s own to the batch.

anchor.add_evidence_to_last_individual = function( evidence_id,
source_ids,
model_id )

Adds “anonymous” evidence individual that is referenced in the individual’s annotations, as well as a fact of it’s own to the batch.

anchor.add_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a single fact to a model.

anchor.add_fact = function( triple,
model_id )

Requests necessary to add an edge between two instances in a model.

anchor.add_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a referenced fact (edge) in a model.

anchor.add_fact_evidence = function( model_id,
source_id,
target_id,
rel_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing a fact in a model.

anchor.add_individual = function( class_expr,
model_id )

Requests necessary to add an instance of with type class to the model.

anchor.add_individual_annotation = function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to an individual in a model.

anchor.add_individual_evidence = function( model_id,
indv_id,
evidence_id,
source_ids )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

anchor.add_model = function( taxon_id,
class_id )

Trigger a rebuild response bbopx.barista.response on attempting to create a new model...from nothing.

anchor.add_model = function( argument_hash )

Essentially a wrapper for the “generate” class of model methods.

anchor.add_model_annotation = function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation addition to a model.

anchor.add_set_class_expression = function( type,
class_expr_list )

Intersections and unions.

anchor.add_simple_composite = function( model_id,
cls_expr,
enabled_by_expr,
occurs_in_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to add a simple composite unit (class, enabled_by, and occurs_in) to a model.

anchor.add_svf_expression = function( class_expr,
property_id )

Special use.

anchor.add_type_to_individual = function( class_expr,
individual_id,
model_id )

Add the identified type to the individual.

bbopx.noctua.edit.node.prototype.add_types = function( in_types,
inferred_p )

Add types to current types.

bbopx.noctua.edit.annotation = function( kv_set )

Edit annotations.

bbopx.barista.response.prototype.annotations = function()

Returns a list of the (complex) annotations found in the response.

anchor.annotations = function()

Return list of annotations in request.

bbopx.minerva.class_expression.prototype.as_class = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

bbopx.minerva.class_expression.prototype.as_set = function( set_type,
set_list )

Convert a null class_expression into a set of class expressions.

bbopx.minerva.class_expression.prototype.as_svf = function( class_expr,
property_id )

Convert a null class_expression into an arbitrary SVF.

Let’s try and communicate with the socket.io server (Barista) for messages and the like--client-to-client communication.

Generic BBOP handler for dealing with the gross parsing of responses from the GO Molecular Model Manager REST server JSON responses.

jQuery manager for communication with Minerva (via Barista).

Handle requests to Minerva in a somewhat structured way.

Handle sets of requests and serialize for Minerva call.

Internal usage variable for keeping track of implicit assignToVariable on the client (see Minerva).

Playing with graph area scroll.

Simple abstraction to take care of operating on stored locations.

Namespace for large drawing routines.

This package was automatically generated during the build process and contains its version information--this is the release of the API that you have.

bbopx.noctua.widgets.build_token_link = function( url,
token )

“Static” function.

Let’s try and communicate with the socket.io server (Barista) for messages and the like--client-to-client communication.

Generic BBOP handler for dealing with the gross parsing of responses from the GO Molecular Model Manager REST server JSON responses.

jQuery manager for communication with Minerva (via Barista).

Handle requests to Minerva in a somewhat structured way.

Handle sets of requests and serialize for Minerva call.

Internal usage variable for keeping track of implicit assignToVariable on the client (see Minerva).

Playing with graph area scroll.

Object for keeping track of our annotations.

Simple abstraction to take care of operating on stored locations.

Namespace for large drawing routines.

This package was automatically generated during the build process and contains its version information--this is the release of the API that you have.

bbopx.noctua.widgets.build_token_link = function( url,
token )

“Static” function.

anchor.callable = function()

Serialize a request set and the component requests.

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

bbopx.minerva.class_expression.prototype.category = function()

Try to put an instance type into some kind of rendering category.

anchor.clairvoyance = function( top,
left )

Remote awareness of our location.

bbopx.minerva.class_expression.prototype.class_id = function()

The considered class id.

bbopx.minerva.class_expression.prototype.class_label = function()

The considered class label, defaults to ID if not found.

bbopx.barista.client = function( barista_location,
token )

Registry for client-to-client communication via Barista.

bbopx.barista.response.prototype.commentary = function()

Returns the commentary object (whatever that might be in any given case).

bbopx.noctua.widgets.compute_shield = function()

Contained blocking shield for general compute activity.

anchor.connect = function( model_id )

Required call before using messenger.

bbopx.noctua.widgets.contained_modal = function( type,
arg_title,
arg_body )

Object.

A handful of functions for drawing entities in different contexts.

anchor.callable = function()

Serialize a request set and the component requests.

anchor.capella_bootstrap_model = function( bootstrap_obj,
term2aspect )

DEPRECATED: This is currently very very old code and is mostly here as a bookmark on where to restart.

bbopx.minerva.class_expression.prototype.category = function()

Try to put an instance type into some kind of rendering category.

anchor.clairvoyance = function( top,
left )

Remote awareness of our location.

bbopx.minerva.class_expression.prototype.class_id = function()

The considered class id.

bbopx.minerva.class_expression.prototype.class_label = function()

The considered class label, defaults to ID if not found.

bbopx.barista.client = function( barista_location,
token )

Registry for client-to-client communication via Barista.

bbopx.barista.response.prototype.commentary = function()

Returns the commentary object (whatever that might be in any given case).

bbopx.noctua.widgets.compute_shield = function()

Contained blocking shield for general compute activity.

anchor.connect = function( model_id )

Required call before using messenger.

bbopx.noctua.widgets.contained_modal = function( type,
arg_title,
arg_body )

Object.

A handful of functions for drawing entities in different contexts.

bbopx.barista.response.prototype.data = function()

Returns the data object (whatever that might be in any given case).

bbopx.noctua.draggable_canvas = function( container_id )

Make the div a draggable canvas.

bbopx.barista.response.prototype.data = function()

Returns the data object (whatever that might be in any given case).

bbopx.noctua.draggable_canvas = function( container_id )

Make the div a draggable canvas.

diff --git a/docs/index/General2.html b/docs/index/General2.html index 0f881a2..97541f8 100644 --- a/docs/index/General2.html +++ b/docs/index/General2.html @@ -11,49 +11,49 @@ -

Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

E
	edit.js
	edit_annotation_modal, bbopx.noctua.widgets
	edit_node_modal, bbopx.noctua.widgets
	enode_to_stack, bbopx.noctua.widgets
	entity, bbopx.minerva.request
	evidence, bbopx.barista.response
	export, bbopx.barista.response
	export_model, bbopx.minerva.manager
	expressions, bbopx.minerva.request
F
	fact, bbopx.minerva.request
	facts, bbopx.barista.response
	frame
	Functions Global minerva/class_expression.js noctua/edit.js bbopx.barista.client bbopx.barista.response bbopx.minerva.manager bbopx.minerva.request bbopx.minerva.request_set bbopx.minerva.request_variable bbopx.noctua.draggable_canvas bbopx.noctua.location-store bbopx.noctua.widgets context.js
G
	get, bbopx.noctua.location-store
	get_layout, bbopx.barista.client
	get_meta bbopx.minerva.manager bbopx.minerva.request_set
	get_model bbopx.minerva.manager bbopx.minerva.request_set
	get_model_undo_redo, bbopx.minerva.manager
	get_type_by_id
	get_undo_redo, bbopx.minerva.request_set
H
	has_redo_p, bbopx.barista.response
	has_undo_p, bbopx.barista.response
I
	id
	import_model, bbopx.minerva.manager
	inconsistent_p, bbopx.barista.response
	individual, bbopx.minerva.request
	individuals, bbopx.barista.response
	inferred_individuals, bbopx.barista.response
	inferred_p
	intention, bbopx.barista.response
L
	last_fact_triple, bbopx.minerva.request_set
	last_individual_id, bbopx.minerva.request_set
	location-store.js
	location_store, bbopx.noctua.location-store
M
	manager, bbopx.minerva.manager
	manager.js
	message, bbopx.barista.client
	model, bbopx.minerva.request
	model_id, bbopx.barista.response
	model_ids, bbopx.barista.response
	models_meta, bbopx.barista.response
N
	nested_p
O
	object, bbopx.minerva.request
	objectify, bbopx.minerva.request
	okay, bbopx.barista.client
P
	packet_id, bbopx.barista.response
	parse
	perform_redo, bbopx.minerva.manager
	perform_undo, bbopx.minerva.manager
	predicate, bbopx.minerva.request
	properties, bbopx.barista.response
	property_id
	property_label
Q
	query, bbopx.barista.client

Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

E
	edit.js
	edit_annotation_modal, bbopx.noctua.widgets
	edit_node_modal, bbopx.noctua.widgets
	enode_to_stack, bbopx.noctua.widgets
	entity, bbopx.minerva.request
	evidence, bbopx.barista.response
	export, bbopx.barista.response
	export_model, bbopx.minerva.manager
	expressions, bbopx.minerva.request
F
	fact, bbopx.minerva.request
	facts, bbopx.barista.response
	frame
	Functions Global bbopx.barista.client bbopx.barista.response bbopx.minerva.manager bbopx.minerva.request bbopx.minerva.request_set bbopx.minerva.request_variable bbopx.noctua.draggable_canvas bbopx.noctua.edit.annotation bbopx.noctua.location-store bbopx.noctua.widgets context.js
G
	get, bbopx.noctua.location-store
	get_layout, bbopx.barista.client
	get_meta bbopx.minerva.manager bbopx.minerva.request_set
	get_model bbopx.minerva.manager bbopx.minerva.request_set
	get_model_undo_redo, bbopx.minerva.manager
	get_type_by_id, bbopx.noctua.edit.annotation
	get_undo_redo, bbopx.minerva.request_set
H
	has_redo_p, bbopx.barista.response
	has_undo_p, bbopx.barista.response
I
	id Global bbopx.noctua.edit.annotation
	import_model, bbopx.minerva.manager
	inconsistent_p, bbopx.barista.response
	individual, bbopx.minerva.request
	individuals, bbopx.barista.response
	inferred_individuals, bbopx.barista.response
	inferred_p
	intention, bbopx.barista.response
L
	last_fact_triple, bbopx.minerva.request_set
	last_individual_id, bbopx.minerva.request_set
	location-store.js
	location_store, bbopx.noctua.location-store
M
	manager, bbopx.minerva.manager
	manager.js
	message, bbopx.barista.client
	model, bbopx.minerva.request
	model_id, bbopx.barista.response
	model_ids, bbopx.barista.response
	models_meta, bbopx.barista.response
N
	nested_p
O
	object, bbopx.minerva.request
	objectify, bbopx.minerva.request
	okay, bbopx.barista.client
P
	packet_id, bbopx.barista.response
	parse
	perform_redo, bbopx.minerva.manager
	perform_undo, bbopx.minerva.manager
	predicate, bbopx.minerva.request
	properties, bbopx.barista.response
	property, bbopx.noctua.edit.annotation
	property_id
	property_label
Q
	query, bbopx.barista.client

Contained shield for generically editing the annotations of an identifier entity.

bbopx.noctua.widgets.edit_node_modal = function( ecore,
manager,
enode,
relations,
aid,
gserv,
gconf )

Contained shield for editing the properties of a node (including deletion).

bbopx.noctua.widgets.enode_to_stack = function( enode,
aid )

Takes a core edit node as the argument, categorize the contained types, order them.

anchor.entity = function()

The specified entity string.

bbopx.barista.response.prototype.evidence = function()

Returns a list of the evidence found in the response.

bbopx.barista.response.prototype.export_model = function()

Returns the string of the export found in the return.

anchor.export_model = function( model_id,
format )

[DEPRECATED]

anchor.expressions = function()

Return list of expressions in request.

Core edit model.

Contained shield for generically editing the annotations of an identifier entity.

bbopx.noctua.widgets.edit_node_modal = function( ecore,
manager,
enode,
relations,
aid,
gserv,
gconf )

Contained shield for editing the properties of a node (including deletion).

bbopx.noctua.widgets.enode_to_stack = function( enode,
aid )

Takes a core edit node as the argument, categorize the contained types, order them.

anchor.entity = function()

The specified entity string.

bbopx.barista.response.prototype.evidence = function()

Returns a list of the evidence found in the response.

bbopx.barista.response.prototype.export_model = function()

Returns the string of the export found in the return.

anchor.export_model = function( model_id,
format )

[DEPRECATED]

anchor.expressions = function()

Return list of expressions in request.

anchor.fact = function( sub,
obj,
pred )

Add a fact to the request.

bbopx.barista.response.prototype.facts = function()

Returns a list of the facts in the response.

bbopx.minerva.class_expression.prototype.frame = function()

If the type has a recursive frame, a list of the types it contains.

anchor.fact = function( sub,
obj,
pred )

Add a fact to the request.

bbopx.barista.response.prototype.facts = function()

Returns a list of the facts in the response.

bbopx.minerva.class_expression.prototype.frame = function()

If the type has a recursive frame, a list of the types it contains.

anchor.get = function( id )

Get x/y coord of id.

anchor.get_layout = function()

Wrapper for the only thing query is currently used for.

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

anchor.get_meta = function()

Essentially, get the list of relations.

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

anchor.get_model = function( model_id )

The the state of a model.

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

anchor.get_undo_redo = function( model_id )

Get the current undo/redo information for a model.

anchor.get = function( id )

Get x/y coord of id.

anchor.get_layout = function()

Wrapper for the only thing query is currently used for.

anchor.get_meta = function()

Trigger meta bbopx.barista.response with a list of all model meta-information.

anchor.get_meta = function()

Essentially, get the list of relations.

anchor.get_model = function( model_id )

Trigger a rebuild bbopx.barista.response with a model.

anchor.get_model = function( model_id )

The the state of a model.

anchor.get_model_undo_redo = function( model_id )

Trigger meta bbopx.barista.response of requested model’s undo/redo information.

bbopx.noctua.edit.node.prototype.get_type_by_id = function( type_id )

Get the

anchor.get_undo_redo = function( model_id )

Get the current undo/redo information for a model.

bbopx.barista.response.prototype.has_redo_p = function()

Returns a true or false depending on the existence a redo list.

bbopx.barista.response.prototype.has_undo_p = function()

Returns a true or false depending on the existence an undo list.

bbopx.barista.response.prototype.has_redo_p = function()

Returns a true or false depending on the existence a redo list.

bbopx.barista.response.prototype.has_undo_p = function()

Returns a true or false depending on the existence an undo list.

bbopx.minerva.class_expression.prototype.id = function()

n/a

anchor.import_model = function( model_string )

[DEPRECATED]

bbopx.barista.response.prototype.inconsistent_p = function()

Returns true or false on whether or not the returned model is thought to be inconsistent.

anchor.individual = function( ind_id )

Get/set the instance of this request.

bbopx.barista.response.prototype.individuals = function()

Returns a list of the individuals in the response.

bbopx.barista.response.prototype.inferred_individuals = function()

Returns a list of the inferred_individuals in the response.

bbopx.minerva.class_expression.prototype.inferred_p = function()

n/a

bbopx.barista.response.prototype.intention = function()

Returns the user intention for a call.

bbopx.minerva.class_expression.prototype.id = function()

n/a

bbopx.noctua.edit.annotation.prototype.id = function()

The unique id of this annotation.

anchor.import_model = function( model_string )

[DEPRECATED]

bbopx.barista.response.prototype.inconsistent_p = function()

Returns true or false on whether or not the returned model is thought to be inconsistent.

anchor.individual = function( ind_id )

Get/set the instance of this request.

bbopx.barista.response.prototype.individuals = function()

Returns a list of the individuals in the response.

bbopx.barista.response.prototype.inferred_individuals = function()

Returns a list of the inferred_individuals in the response.

bbopx.minerva.class_expression.prototype.inferred_p = function()

n/a

bbopx.barista.response.prototype.intention = function()

Returns the user intention for a call.

anchor.last_fact_triple = function( number_to_skip )

In our model, facts are anonymous (do not have an ID) and need to be referred to by their unique triple: subject id, object id, and predicate (edge type) id.

anchor.last_individual_id = function( number_to_skip )

Return the ID of the last individual identified in a call (implicitly or explicitly).

bbopx.noctua.location_store = function()

Object to track object locations.

anchor.last_fact_triple = function( number_to_skip )

In our model, facts are anonymous (do not have an ID) and need to be referred to by their unique triple: subject id, object id, and predicate (edge type) id.

anchor.last_individual_id = function( number_to_skip )

Return the ID of the last individual identified in a call (implicitly or explicitly).

bbopx.noctua.location_store = function()

Object to track object locations.

bbopx.minerva.manager = function( barista_location,
namespace,
user_token,
engine,
use_jsonp )

A manager for handling the AJAX and registry.

anchor.message = function( m )

Just a message.

anchor.model = function( model )

Get/set the topic model of this request.

bbopx.barista.response.prototype.model_id = function()

Returns the model id of the response.

bbopx.barista.response.prototype.model_ids = function()

Returns a list the model ids found in the response.

bbopx.barista.response.prototype.models_meta = function()

Returns a hash of the model ids to models properties found in the response.

bbopx.minerva.manager = function( barista_location,
namespace,
user_token,
engine,
use_jsonp )

A manager for handling the AJAX and registry.

anchor.message = function( m )

Just a message.

anchor.model = function( model )

Get/set the topic model of this request.

bbopx.barista.response.prototype.model_id = function()

Returns the model id of the response.

bbopx.barista.response.prototype.model_ids = function()

Returns a list the model ids found in the response.

bbopx.barista.response.prototype.models_meta = function()

Returns a hash of the model ids to models properties found in the response.

bbopx.minerva.class_expression.prototype.nested_p = function()

If the type has a recursive frame.

bbopx.minerva.class_expression.prototype.nested_p = function()

If the type has a recursive frame.

anchor.object = function( obj )

Get/set the object of this request.

anchor.objectify = function()

Should only be used in the context of making a request set.

anchor.okay = function()

anchor.object = function( obj )

Get/set the object of this request.

anchor.objectify = function()

Should only be used in the context of making a request set.

anchor.okay = function()

bbopx.barista.response.prototype.packet_id = function()

Returns the response’s unique id.

bbopx.minerva.class_expression.prototype.parse = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

anchor.predicate = function( pred )

Get/set the predicate of this request.

bbopx.barista.response.prototype.properties = function()

Returns a list of the properties in the response.

bbopx.minerva.class_expression.prototype.property_id = function()

The considered class property id.

bbopx.minerva.class_expression.prototype.property_label = function()

The considered class property label.

bbopx.barista.response.prototype.packet_id = function()

Returns the response’s unique id.

bbopx.minerva.class_expression.prototype.parse = function( in_type )

Parse a JSON blob into the current instance, clobbering anything in there, except id.

anchor.perform_redo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll forward the model to “next” state.

anchor.perform_undo = function( model_id )

Trigger rebuild bbopx.barista.response after an attempt to roll back the model to “last” state.

anchor.predicate = function( pred )

Get/set the predicate of this request.

bbopx.barista.response.prototype.properties = function()

Returns a list of the properties in the response.

bbopx.noctua.edit.annotation.prototype.property = function( key,
value )

bbopx.minerva.class_expression.prototype.property_id = function()

The considered class property id.

bbopx.minerva.class_expression.prototype.property_label = function()

The considered class property label.

anchor.query = function( query_class,
data )

General structure for requesting information from Barista about things it might know.

anchor.query = function( query_class,
data )

General structure for requesting information from Barista about things it might know.

diff --git a/docs/index/General3.html b/docs/index/General3.html index 0cdd1f2..71ddb0a 100644 --- a/docs/index/General3.html +++ b/docs/index/General3.html @@ -11,29 +11,29 @@ -

Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

R
	redo_last_model_batch, bbopx.minerva.request_set
	relations, bbopx.barista.response
	relay, bbopx.barista.client
	release, bbopx.version
	remove, bbopx.noctua.location-store
	remove_annotation_from_fact, bbopx.minerva.request_set
	remove_annotation_from_individual, bbopx.minerva.request_set
	remove_annotation_from_model, bbopx.minerva.request_set
	remove_class_expression, bbopx.minerva.manager
	remove_evidence, bbopx.minerva.request_set
	remove_fact bbopx.minerva.manager bbopx.minerva.request_set
	remove_fact_annotation, bbopx.minerva.manager
	remove_individual bbopx.minerva.manager bbopx.minerva.request_set
	remove_individual_annotation, bbopx.minerva.manager
	remove_model_annotation, bbopx.minerva.manager
	remove_type_from_individual, bbopx.minerva.request_set
	render_node_stack, bbopx.noctua.widgets
	repaint_edge_table, bbopx.noctua.widgets
	repaint_exp_table, bbopx.noctua.widgets
	repaint_info, bbopx.noctua.widgets
	reporter, bbopx.noctua.widgets
	request, bbopx.minerva.request
	request_set, bbopx.minerva.request_set
	request_variable, bbopx.minerva.request_variable
	request_with, bbopx.minerva.manager
	requests.js
	response, bbopx.barista.response
	response.js
	revision, bbopx.version
S
	set_p, bbopx.minerva.request_variable
	signal, bbopx.barista.response
	signature
	sorted_relation_list, bbopx.noctua.widgets
	special, bbopx.minerva.request
	store_model bbopx.minerva.manager bbopx.minerva.request_set
	structure Global bbopx.minerva.request_set
	subject, bbopx.minerva.request
	svf_class_expression
T
	telekinesis, bbopx.barista.client
	token, bbopx.barista.client
	type
	type_to_full, context.js
	type_to_minimal, context.js
	type_to_span, context.js
	types
U
	undo_last_model_batch, bbopx.minerva.request_set
	update_enode, bbopx.noctua.widgets
	user_check, bbopx.noctua.widgets
	user_id bbopx.barista.response bbopx.minerva.manager
	user_token, bbopx.minerva.manager
V
	value, bbopx.minerva.request_variable
	Variables, bbopx.version
	version.js
W
	widgets.js
	wipe, bbopx.noctua.widgets

Index

$#! · 0-9 · A · B · C · D · E · F · G · H · I · J · K · L · M · N · O · P · Q · R · S · T · U · V · W · X · Y · Z

R
	redo_last_model_batch, bbopx.minerva.request_set
	relations, bbopx.barista.response
	relay, bbopx.barista.client
	release, bbopx.version
	remove, bbopx.noctua.location-store
	remove_annotation_from_fact, bbopx.minerva.request_set
	remove_annotation_from_individual, bbopx.minerva.request_set
	remove_annotation_from_model, bbopx.minerva.request_set
	remove_class_expression, bbopx.minerva.manager
	remove_evidence bbopx.minerva.manager bbopx.minerva.request_set
	remove_fact bbopx.minerva.manager bbopx.minerva.request_set
	remove_fact_annotation, bbopx.minerva.manager
	remove_individual bbopx.minerva.manager bbopx.minerva.request_set
	remove_individual_annotation, bbopx.minerva.manager
	remove_model_annotation, bbopx.minerva.manager
	remove_type_from_individual, bbopx.minerva.request_set
	render_node_stack, bbopx.noctua.widgets
	repaint_edge_table, bbopx.noctua.widgets
	repaint_exp_table, bbopx.noctua.widgets
	repaint_info, bbopx.noctua.widgets
	reporter, bbopx.noctua.widgets
	request, bbopx.minerva.request
	request_set, bbopx.minerva.request_set
	request_variable, bbopx.minerva.request_variable
	request_with, bbopx.minerva.manager
	requests.js
	response, bbopx.barista.response
	response.js
	revision, bbopx.version
S
	set_p, bbopx.minerva.request_variable
	signal, bbopx.barista.response
	signature
	sorted_relation_list, bbopx.noctua.widgets
	special, bbopx.minerva.request
	store_model bbopx.minerva.manager bbopx.minerva.request_set
	structure Global bbopx.minerva.request_set
	subject, bbopx.minerva.request
	svf_class_expression
T
	telekinesis, bbopx.barista.client
	token, bbopx.barista.client
	type
	type_to_full, context.js
	type_to_minimal, context.js
	type_to_span, context.js
	types, bbopx.noctua.edit.annotation
U
	undo_last_model_batch, bbopx.minerva.request_set
	update_enode, bbopx.noctua.widgets
	user_check, bbopx.noctua.widgets
	user_id bbopx.barista.response bbopx.minerva.manager
	user_token, bbopx.minerva.manager
V
	value, bbopx.minerva.request_variable
	Variables, bbopx.version
	version.js
W
	widgets.js
	wipe, bbopx.noctua.widgets

anchor.redo_last_model_batch = function( model_id )

Redo the last batch of operations performed on the model.

bbopx.barista.response.prototype.relations = function()

Returns a list of the relations found in the response.

anchor.relay = function( relay_class,
data )

General structure for relaying information between clients.

bbopx.version.release

Partial version for this library: release (date-like) information.

anchor.remove = function( id )

True is removal, false if wasn’t there.

anchor.remove_annotation_from_fact = function( key,
value,
triple,
model_id )

Removes unique key/value set from a fact.

anchor.remove_annotation_from_individual = function( key,
value,
individual_id,
model_id )

Removes unique key/value set from an individual.

anchor.remove_annotation_from_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

anchor.remove_evidence = function( evidence_individual_id,
model_id )

Remove an evidence annotation from an individual or edge.

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

anchor.remove_fact = function( triple,
model_id )

Requests necessary to remove an edge between two instances in a model.

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

anchor.remove_individual = function( individual_id,
model_id )

Requests necessary to remove an individual.

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

anchor.remove_type_from_individual = function( class_expr,
individual_id,
model_id )

Remove the identified type from the individual.

bbopx.noctua.widgets.render_node_stack = function( enode,
aid )

???

bbopx.noctua.widgets.repaint_edge_table = function( ecore,
aid,
table_div )

Add edit model edge contents to a descriptive table.

bbopx.noctua.widgets.repaint_exp_table = function( ecore,
aid,
table_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.repaint_info = function( ecore,
aid,
info_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.reporter = function( output_id )

Object.

bbopx.minerva.request = function( entity,
operation )

Contructor for a Minerva request item.

bbopx.minerva.request_set = function( user_token,
model_id )

Constructor for a Minerva request item set.

bbopx.minerva.request_variable = function( varvalue )

Contructor for a request variable, used to relate references during a request.

anchor.request_with = function( request_set,
model_id )

Make a custom request with your own request set.

bbopx.barista.response = function( raw )

Contructor for a Minerva REST JSON response object.

bbopx.version.revision

Partial version for this library; revision (major/minor version numbers) information.

anchor.redo_last_model_batch = function( model_id )

Redo the last batch of operations performed on the model.

bbopx.barista.response.prototype.relations = function()

Returns a list of the relations found in the response.

anchor.relay = function( relay_class,
data )

General structure for relaying information between clients.

bbopx.version.release

Partial version for this library: release (date-like) information.

anchor.remove = function( id )

True is removal, false if wasn’t there.

anchor.remove_annotation_from_fact = function( key,
value,
triple,
model_id )

Removes unique key/value set from a fact.

anchor.remove_annotation_from_individual = function( key,
value,
individual_id,
model_id )

Removes unique key/value set from an individual.

anchor.remove_annotation_from_model = function( key,
value,
model_id )

Adds unique key/value set to model.

anchor.remove_class_expression = function( model_id,
individual_id,
cls_expr )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a complex class expression from an individual in a model.

anchor.remove_evidence = function( model_id,
evidence_individual_id )

Trigger a rebuild response bbopx.barista.response on an evidence addition referencing an individual in a model.

anchor.remove_evidence = function( evidence_individual_id,
model_id )

Remove an evidence annotation from an individual or edge.

anchor.remove_fact = function( model_id,
source_id,
target_id,
rel_id )

Trigger merge (or possibly a rebuild) bbopx.barista.response on attempt to remove a single fact to a model.

anchor.remove_fact = function( triple,
model_id )

Requests necessary to remove an edge between two instances in a model.

anchor.remove_fact_annotation = function( model_id,
source_id,
target_id,
rel_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from a referenced fact (edge) in a model.

anchor.remove_individual = function( model_id,
indv_id )

Trigger a rebuild bbopx.barista.response on attempt to remove an individual from a model.

anchor.remove_individual = function( individual_id,
model_id )

Requests necessary to remove an individual.

anchor.remove_individual_annotation =function( model_id,
indv_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removeal from an individual in a model.

anchor.remove_model_annotation =function( model_id,
key,
value )

Trigger a rebuild response bbopx.barista.response on an annotation removal from a model.

anchor.remove_type_from_individual = function( class_expr,
individual_id,
model_id )

Remove the identified type from the individual.

bbopx.noctua.widgets.render_node_stack = function( enode,
aid )

???

bbopx.noctua.widgets.repaint_edge_table = function( ecore,
aid,
table_div )

Add edit model edge contents to a descriptive table.

bbopx.noctua.widgets.repaint_exp_table = function( ecore,
aid,
table_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.repaint_info = function( ecore,
aid,
info_div )

Add edit model node contents to a descriptive table.

bbopx.noctua.widgets.reporter = function( output_id )

Object.

bbopx.minerva.request = function( entity,
operation )

Contructor for a Minerva request item.

bbopx.minerva.request_set = function( user_token,
model_id )

Constructor for a Minerva request item set.

bbopx.minerva.request_variable = function( varvalue )

Contructor for a request variable, used to relate references during a request.

anchor.request_with = function( request_set,
model_id )

Make a custom request with your own request set.

bbopx.barista.response = function( raw )

Contructor for a Minerva REST JSON response object.

bbopx.version.revision

Partial version for this library; revision (major/minor version numbers) information.

anchor.set_p = function()

Returns true or false on whether or not the user changed the value of the setting.

bbopx.barista.response.prototype.signal = function()

Returns the server’s action signal, if there was one.

bbopx.minerva.class_expression.prototype.signature = function()

A cheap way of identifying if two class_expressions are the same.

bbopx.noctua.widgets.sorted_relation_list = function( relations,
aid )

Function that returns a sorted relation list of the form [[id, label], ...]

anchor.special = function( name,
val )

Add a “special” variable to the request.

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

anchor.store_model = function( model_id )

Store the model to the model store (file on disk as of this writing, but may change soon).

bbopx.minerva.class_expression.prototype.structure = function()

Hm.

anchor.structure = function()

Create the JSON object that will be passed to the Minerva server.

anchor.subject = function( sub )

Get/set the subject of this request.

bbopx.minerva.class_expression.prototype.svf_class_expression = function()

The class expression when we are dealing with SVF.

anchor.set_p = function()

Returns true or false on whether or not the user changed the value of the setting.

bbopx.barista.response.prototype.signal = function()

Returns the server’s action signal, if there was one.

bbopx.minerva.class_expression.prototype.signature = function()

A cheap way of identifying if two class_expressions are the same.

bbopx.noctua.widgets.sorted_relation_list = function( relations,
aid )

Function that returns a sorted relation list of the form [[id, label], ...]

anchor.special = function( name,
val )

Add a “special” variable to the request.

anchor.store_model = function( model_id )

Trigger a rebuild response bbopx.barista.response on a “permanent” store operation on a model.

anchor.store_model = function( model_id )

Store the model to the model store (file on disk as of this writing, but may change soon).

bbopx.minerva.class_expression.prototype.structure = function()

Hm.

anchor.structure = function()

Create the JSON object that will be passed to the Minerva server.

anchor.subject = function( sub )

Get/set the subject of this request.

bbopx.minerva.class_expression.prototype.svf_class_expression = function()

The class expression when we are dealing with SVF.

anchor.telekinesis = function( item_id,
top,
left )

Move objects at a distance.

anchor.token = function( in_token )

Operate on your identifying token.

bbopx.minerva.class_expression.prototype.type = function()

The “type” of the type.

bbopx.noctua.type_to_full = function( in_type,
aid )

A recursive writer for when we no longer care--a table that goes on and on...

bbopx.noctua.type_to_minimal = function( in_type,
aid )

Return a single-line text-only one-level representation of a type.

bbopx.noctua.type_to_span = function( in_type,
aid,
color_p )

Essentially, minimal rendered as a usable span, with a color option.

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

anchor.telekinesis = function( item_id,
top,
left )

Move objects at a distance.

anchor.token = function( in_token )

Operate on your identifying token.

bbopx.minerva.class_expression.prototype.type = function()

The “type” of the type.

bbopx.noctua.type_to_full = function( in_type,
aid )

A recursive writer for when we no longer care--a table that goes on and on...

bbopx.noctua.type_to_minimal = function( in_type,
aid )

Return a single-line text-only one-level representation of a type.

bbopx.noctua.type_to_span = function( in_type,
aid,
color_p )

Essentially, minimal rendered as a usable span, with a color option.

bbopx.noctua.edit.node.prototype.types = function( in_types )

Get current types; replace current types.

anchor.undo_last_model_batch = function( model_id )

Undo the last batch of operations performed on the model.

bbopx.noctua.widgets.update_enode = function( ecore,
enode,
aid )

Update the displayed contents of an enode.

bbopx.noctua.widgets.user_check = function( barista_loc,
given_token,
div_id )

Given a token, either report a bad token ot

bbopx.barista.response.prototype.user_id = function()

Returns the user id (uid) for a call if it was generated my a known user.

anchor.user_id = function( user_token )

DEPRECATED: use user_token()

anchor.user_token = function( user_token )

Get/set the user token.

anchor.undo_last_model_batch = function( model_id )

Undo the last batch of operations performed on the model.

bbopx.noctua.widgets.update_enode = function( ecore,
enode,
aid )

Update the displayed contents of an enode.

bbopx.noctua.widgets.user_check = function( barista_loc,
given_token,
div_id )

Given a token, either report a bad token ot

bbopx.barista.response.prototype.user_id = function()

Returns the user id (uid) for a call if it was generated my a known user.

anchor.user_id = function( user_token )

DEPRECATED: use user_token()

anchor.user_token = function( user_token )

Get/set the user token.

The value of the variable to be used.

bbopx.noctua.widgets.wipe = function( div )

Wipe out the contents of a jQuery-identified div.

bbopx.noctua.widgets.wipe = function( div )

Wipe out the contents of a jQuery-identified div.

diff --git a/docs/javascript/searchdata.js b/docs/javascript/searchdata.js index 3852907..f461ac0 100644 --- a/docs/javascript/searchdata.js +++ b/docs/javascript/searchdata.js @@ -1,30 +1,30 @@ var indexSectionsWithContent = { - "Functions": { + "Variables": { "Symbols": false, "Numbers": false, - "A": true, - "B": true, - "C": true, - "D": true, - "E": true, - "F": true, - "G": true, - "H": true, - "I": true, + "A": false, + "B": false, + "C": false, + "D": false, + "E": false, + "F": false, + "G": false, + "H": false, + "I": false, "J": false, "K": false, - "L": true, - "M": true, - "N": true, - "O": true, - "P": true, - "Q": true, + "L": false, + "M": false, + "N": false, + "O": false, + "P": false, + "Q": false, "R": true, - "S": true, - "T": true, - "U": true, - "V": true, - "W": true, + "S": false, + "T": false, + "U": false, + "V": false, + "W": false, "X": false, "Y": false, "Z": false @@ -36,7 +36,7 @@ var indexSectionsWithContent = { "B": false, "C": true, "D": false, - "E": true, + "E": false, "F": false, "G": false, "H": false, @@ -66,7 +66,7 @@ var indexSectionsWithContent = { "B": true, "C": true, "D": true, - "E": false, + "E": true, "F": false, "G": false, "H": false, @@ -89,7 +89,7 @@ var indexSectionsWithContent = { "Y": false, "Z": false }, - "General": { + "Functions": { "Symbols": false, "Numbers": false, "A": true, @@ -99,51 +99,51 @@ var indexSectionsWithContent = { "E": true, "F": true, "G": true, - "H": false, + "H": true, "I": true, "J": false, "K": false, - "L": false, + "L": true, "M": true, - "N": false, - "O": false, + "N": true, + "O": true, "P": true, - "Q": false, + "Q": true, "R": true, "S": true, "T": true, "U": true, "V": true, - "W": false, + "W": true, "X": false, "Y": false, "Z": false }, - "Variables": { + "General": { "Symbols": false, "Numbers": false, - "A": false, - "B": false, - "C": false, - "D": false, - "E": false, - "F": false, - "G": false, + "A": true, + "B": true, + "C": true, + "D": true, + "E": true, + "F": true, + "G": true, "H": false, - "I": false, + "I": true, "J": false, "K": false, "L": false, - "M": false, + "M": true, "N": false, "O": false, - "P": false, + "P": true, "Q": false, "R": true, - "S": false, - "T": false, - "U": false, - "V": false, + "S": true, + "T": true, + "U": true, + "V": true, "W": false, "X": false, "Y": false, diff --git a/docs/search/ClassesB.html b/docs/search/ClassesB.html index dfdfba4..58dc7c0 100644 --- a/docs/search/ClassesB.html +++ b/docs/search/ClassesB.html @@ -11,7 +11,7 @@ -

bbopx.barista.client

bbopx.barista.response

bbopx.minerva.manager

bbopx.minerva.request

bbopx.minerva.request_set

bbopx.minerva.request_variable

bbopx.noctua.draggable_canvas

bbopx.noctua.location-store

bbopx.noctua.widgets

bbopx.version

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manager.js

manager.js

bbopx.minerva.manager

See also

bbopx.minerva.manager

See also

Functions

user_token

Arguments

Returns

get_model

Arguments

Returns

get_model

Arguments

Returns

get_meta

Arguments

Returns

get_meta

Arguments

Returns

get_model_undo_redo

Arguments

Returns

get_model_undo_redo

Arguments

Returns

perform_undo

Arguments

Returns

perform_undo

Arguments

Returns

perform_redo

Arguments

Returns

perform_redo

Arguments

Returns

add_fact

Arguments

Returns

add_fact

Arguments

Returns

remove_fact

Arguments

Returns

remove_fact

Arguments

Returns

add_simple_composite

Arguments

Returns

add_simple_composite

Arguments

Returns

add_class_expression

Arguments

Returns

add_class_expression

Arguments

Returns

remove_class_expression

Arguments

Returns

remove_class_expression

Arguments

Returns

remove_individual

Arguments

Returns

remove_individual

Arguments

Returns

add_model

Arguments

Returns

add_model