Add pnetcdf

DusanJovic-NOAA · Aug 31, 2024 · 8dd084a · 8dd084a
1 parent 9cbc473
commit 8dd084a
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Showing 2 changed files with 30 additions and 6 deletions.
diff --git a/libs/ufslibs/CMakeLists.txt b/libs/ufslibs/CMakeLists.txt
@@ -230,6 +230,25 @@ ExternalProject_Add(cmake_fortran_utils
     LOG_INSTALL ON
 )
 
+##
+## pnetcdf
+##
+ExternalProject_Add(pnetcdf
+    URL ${downloads_prefix}/pnetcdf.tar.gz
+    URL_HASH MD5=31b94d39462b1f1f2293f735c9819bf2
+    BUILD_IN_SOURCE ON
+    CONFIGURE_COMMAND env "MPICC=${MPI_C_COMPILER}"
+                      env "MPICXX=${MPI_CXX_COMPILER}"
+                      env "MPIF90=${MPI_Fortran_COMPILER}"
+                      ./configure --prefix=${install_prefix}/pnetcdf
+                                  --disable-shared
+                                  --enable-static
+    LOG_DOWNLOAD ON
+    LOG_CONFIGURE ON
+    LOG_BUILD ON
+    LOG_INSTALL ON
+)
+
 ##
 ## PIO
 ##
@@ -246,14 +265,15 @@ ExternalProject_Add(pio
                -DUSER_CMAKE_MODULE_PATH=${install_prefix}/cmake_fortran_utils
                -DGENF90_PATH=${install_prefix}/genf90/bin
                -DNetCDF_PATH=${install_prefix}/netcdf
+               -DPnetCDF_PATH=${install_prefix}/pnetcdf
                -DHDF5_PATH=${install_prefix}/hdf5
                -DLIBZ_PATH=${install_prefix}/zlib
     LOG_DOWNLOAD ON
     LOG_CONFIGURE ON
     LOG_BUILD ON
     LOG_INSTALL ON
 )
-ExternalProject_Add_StepDependencies(pio build netcdf_fortran genf90 cmake_fortran_utils)
+ExternalProject_Add_StepDependencies(pio build netcdf_fortran pnetcdf genf90 cmake_fortran_utils)
 
 ##
 ## FMS
@@ -339,17 +359,20 @@ message(STATUS "Set ESMF_COMM to ${ESMF_COMM}")
 
 list(APPEND esmf_env ESMF_COMM=${ESMF_COMM})
 list(APPEND esmf_env ESMF_BOPT=O)
-# list(APPEND esmf_env ESMF_OPTLEVEL=2)
 list(APPEND esmf_env ESMF_F90COMPILEOPTS=${FCFLAGS_esmf})
 list(APPEND esmf_env ESMF_CXXCOMPILEOPTS=${CXXFLAGS_esmf})
 list(APPEND esmf_env ESMF_MPIRUN=mpiexec)
-list(APPEND esmf_env ESMF_NETCDF_INCLUDE=${install_prefix}/netcdf/include)
-list(APPEND esmf_env ESMF_NETCDF_LIBPATH=${install_prefix}/netcdf/lib)
+
 list(APPEND esmf_env ESMF_NETCDF=split)
-list(APPEND esmf_env "ESMF_NETCDF_LIBS=-lnetcdff -lnetcdf -L${install_prefix}/hdf5/lib -lhdf5_hl -lhdf5 -L${install_prefix}/zstd/lib -lzstd -L${install_prefix}/zlib/lib -lz -ldl -lm")
+list(APPEND esmf_env ESMF_NETCDF_INCLUDE=${install_prefix}/netcdf/include)
+list(APPEND esmf_env "ESMF_NETCDF_LIBPATH=${install_prefix}/netcdf/lib ${install_prefix}/hdf5/lib ${install_prefix}/zstd/lib ${install_prefix}/zlib/lib")
+list(APPEND esmf_env "ESMF_NETCDF_LIBS=-lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lzstd -lz -ldl -lm")
+
 list(APPEND esmf_env ESMF_PIO=external)
 list(APPEND esmf_env ESMF_PIO_INCLUDE=${install_prefix}/pio/include)
-list(APPEND esmf_env ESMF_PIO_LIBPATH=${install_prefix}/pio/lib)
+list(APPEND esmf_env "ESMF_PIO_LIBPATH=${install_prefix}/pio/lib -L${install_prefix}/pnetcdf/lib")
+list(APPEND esmf_env "ESMF_PIO_LIBS=-lpioc -lpnetcdf")
+
 list(APPEND esmf_env ESMF_SHARED_LIB_BUILD=OFF)
 list(APPEND esmf_env ESMF_INSTALL_PREFIX=${install_prefix}/esmf)
 list(APPEND esmf_env ESMF_INSTALL_HEADERDIR=include)

diff --git a/libs/ufslibs/fetch.sh b/libs/ufslibs/fetch.sh
@@ -58,6 +58,7 @@ download_and_check_md5sum 84acd096ab4f3300c20db862eecdf7c7  https://github.com/U
 download_and_check_md5sum 8c200fcf7d9d2761037dfd2dabe2216b  https://github.com/Unidata/netcdf-fortran/archive/v4.6.1.tar.gz                           netcdf_fortran.tar.gz
 
 download_and_check_md5sum a3c39f002a7a81882b65b7eb8c9a7d91  https://github.com/CESM-Development/CMake_Fortran_utils/archive/refs/tags/CMake_Fortran_utils_150308.tar.gz cmake_fortran_utils.tar.gz
+download_and_check_md5sum 31b94d39462b1f1f2293f735c9819bf2  https://parallel-netcdf.github.io/Release/pnetcdf-1.13.0.tar.gz                           pnetcdf.tar.gz
 download_and_check_md5sum 7f3504dfb5aab846f4a9018dda7bb8ad  https://github.com/PARALLELIO/genf90/archive/refs/tags/genf90_200608.tar.gz               genf90.tar.gz
 download_and_check_md5sum 171ee9a2b31a73108314a35b4db1dfaa  https://github.com/NCAR/ParallelIO/archive/refs/tags/pio2_5_10.tar.gz                     pio.tar.gz