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Commits on Feb 4, 2024

• version bump after fixing dependency issue (ggseqlogo)

  borauyar

  committed
  29afe07

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• add import statement for seqLogo

  borauyar

  committed
  f054dd9

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• remove import statements related to ggseqlogo

  borauyar

  committed
  e28de05

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• update text description; motifRG no longer used

  borauyar

  committed
  2f2eb3c

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• replace ggseqlogo with seqLogo in vignettes

  borauyar

  committed
  d29dba4

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• drop ggseqlogo plots, add seqLogo plots

  borauyar

  committed
  014fcb5

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• drop ggseqlogo as dependency, add seqLogo as dependency

  borauyar

  committed
  cb48471

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• add new function to convert sequences to position-weight-matrices

  borauyar

  committed
  f248f2d

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Commits on Oct 30, 2023

• version bump

  borauyar

  committed
  a1d10f3

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• bug fix: fixes #15

  borauyar

  committed
  001a791

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• bug fix: add BiocManager to suggests; some methods access BiocManager functions in test/examples/vignettes

  borauyar

  committed
  edbeab9

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Commits on Oct 24, 2023

• bump x.y.z version to odd y following creation of RELEASE_3_18 branch

  jwokaty

  committed
  f155e53

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• bump x.y.z version to even y prior to creation of RELEASE_3_18 branch

  jwokaty

  committed
  9af29aa

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Commits on Apr 25, 2023

• bump x.y.z version to odd y following creation of RELEASE_3_17 branch

  jwokaty

  committed
  5304d5c

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• bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

  jwokaty

  committed
  64293a9

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Commits on Nov 1, 2022

• bump x.y.z version to odd y following creation of RELEASE_3_16 branch

  jwokaty

  committed
  3ba35cb

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• bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

  jwokaty

  committed
  385b33e

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Commits on Apr 26, 2022

• bump x.y.z version to odd y following creation of RELEASE_3_15 branch

  nturaga

  committed
  1eec0e3

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• bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

  nturaga

  committed
  3841e30

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Commits on Nov 21, 2021

• Pass serialized S4 instances thru updateObject()

  hpages

  committed
  8c5dd58

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Commits on Oct 26, 2021

• bump x.y.z version to odd y following creation of RELEASE_3_14 branch

  nturaga

  committed
  34c6483

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• bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

  nturaga

  committed
  1d023c7

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Commits on May 19, 2021

• bump x.y.z version to odd y following creation of RELEASE_3_13 branch

  nturaga

  committed
  d6dc8f8

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• bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

  nturaga

  committed
  ffebafc

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Commits on Mar 4, 2021

• skip gene biotype plot in report if gene_biotype column cannot be found in GTF file

  

  Bora Uyar

  authored and

  Bora Uyar

  committed
  3cc9d41

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Commits on Oct 27, 2020

• bump x.y.z version to odd y following creation of RELEASE_3_12 branch

  nturaga

  committed
  98b2d74

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• bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

  nturaga

  committed
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Commits on Apr 27, 2020

• bump x.y.z version to odd y following creation of RELEASE_3_11 branch

  nturaga

  committed
  ec2d4f7

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• bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

  nturaga

  committed
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Commits on Apr 22, 2020

• version bump

  

  Bora Uyar

  committed
  0cb2473

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• reorganize the returned table from queryGff function to include more information about overlapping query regions

  

  Bora Uyar

  committed
  a5db700

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Commits on Apr 16, 2020

• version bump

  

  Bora Uyar

  authored and

  Bora Uyar

  committed
  01fa8b0

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• revert back to makeCluster - forks dont work in windows

  

  Bora Uyar

  authored and

  Bora Uyar

  committed
  83d7290

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Commits on Apr 12, 2020

• version bump

  

  Bora Uyar

  authored and

  Bora Uyar

  committed
  db49674

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• add fisher.test to import statements, update documentation

  

  Bora Uyar

  authored and

  Bora Uyar

  committed
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