Search results

Properly handle CSV-like TSVs

Status: Open.

#482 In nextstrain/ncov-ingest;

· joverlee521 opened on Dec 6, 2024

RKI: filter for PANGOLIN_LATEST

enhancementNew feature or requestNew feature or request

Status: Open.

#478 In nextstrain/ncov-ingest;

· joverlee521 opened on Oct 3, 2024

GitHub actions log is >2hr behind actual AWS run

bugSomething isn't workingSomething isn't working

Status: Open.

#474 In nextstrain/ncov-ingest;

· corneliusroemer opened on Aug 22, 2024

Benchmark in every rule is annoying - extra 2 lines that should not be necessary

Status: Open.

#472 In nextstrain/ncov-ingest;

· corneliusroemer opened on Aug 22, 2024

Remove --stats when we upgrade to Snakemake v8

Status: Open.

#452 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 18, 2024

Do we need uncompress_cog_uk_metadata and compress_cog_uk_metadata?

Status: Open.

#450 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 17, 2024

Rename master to main

blockedDependent on external developmentDependent on external development

enhancementNew feature or requestNew feature or request

Status: Open.

#449 In nextstrain/ncov-ingest;

· genehack opened on Jun 13, 2024

Explore parallelizing transform-gisaid

Status: Open.

#448 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 13, 2024

GISAID workflow hitting max_session_duration

Status: Open.

#446 In nextstrain/ncov-ingest;

· joverlee521 opened on Jun 11, 2024

Lock dependencies using pip-compile

enhancementNew feature or requestNew feature or request

Status: Open.

#438 In nextstrain/ncov-ingest;

· victorlin opened on Feb 21, 2024

Ingest VirusSeq data

enhancementNew feature or requestNew feature or request

Status: Open.

#421 In nextstrain/ncov-ingest;

· chaoran-chen opened on Dec 7, 2023

Make use of genbank's purpose_of_sampling field

enhancementNew feature or requestNew feature or request

Status: Open.

#415 In nextstrain/ncov-ingest;

· corneliusroemer opened on Aug 10, 2023