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filterAndTrim with ITS data

Status: Open.

#2078 In benjjneb/dada2;

· mya-darsan opened on Jan 23, 2025

Compatibility of DADA2 for ITS amplicon reads

Status: Open.

#2077 In benjjneb/dada2;

· UniAlberta opened on Jan 20, 2025

Help with troubleshooting qiime dada2 denoise-paired error. [NAs produced by integer overflow...is there a fix?]

Status: Open.

#2076 In benjjneb/dada2;

· aron1014 opened on Jan 15, 2025

Explaining discrepancies in microbiome composition caused by changes in sequence files and denoising methods.

Status: Open.

#2075 In benjjneb/dada2;

· emankhalaf opened on Jan 13, 2025

R Encountering Issues When Processing PacBio Revio 16S Data with the DADA2 Pipeline

Status: Open.

#2074 In benjjneb/dada2;

· emankhalaf opened on Jan 9, 2025

Following ITS dada2 cutadapt trimming, why is a minimum length of 50 used?

Status: Open.

#2073 In benjjneb/dada2;

· kdbchau opened on Jan 8, 2025

What do the filtN files do?

Status: Open.

#2072 In benjjneb/dada2;

· kdbchau opened on Jan 8, 2025

assignTaxonomic() never ends with UNITE reference dataset

Status: Open.

#2069 In benjjneb/dada2;

· danielsangarci opened on Jan 3, 2025

Problem with long vectors using Pacbio long reads

Status: Open.

#2066 In benjjneb/dada2;

· BigFatPandar opened on Dec 17, 2024

Silva 138.2 reference fastas not at species level for the former Lactobacillus genus

Status: Open.

#2065 In benjjneb/dada2;

· inespradal opened on Dec 2, 2024

How long does assigntTaxonomoy takes with UNITE database?

Status: Open.

#2064 In benjjneb/dada2;

· sadia-marjia opened on Nov 27, 2024

Take too long time to runing Taxonomy using UNITE database

Status: Open.

#2063 In benjjneb/dada2;

· Danyang1111 opened on Nov 27, 2024