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Pipeline failing with older fastq file

Status: Open.

#216 In TORCH-Consortium/MAGMA;

· RuanSpies21 opened on Aug 13, 2024

MINOR_VARIANTS_ANALYSIS_WF:TBPROFILER_VCF_PROFILE__LOFREQ error on conda config

Status: Open.

#207 In TORCH-Consortium/MAGMA;

· Mxrcon opened on Jul 11, 2024

Transition to nf-core standard for pipeline and documentation

Status: Open.

#188 In TORCH-Consortium/MAGMA;

· abhi18av opened on Mar 18, 2024

Standardisation of MGIT-sputum-culture pairs

enhancementNew feature or requestNew feature or request

Status: Open.

#166 In TORCH-Consortium/MAGMA;

· vrennie opened on Aug 9, 2023

Speeding up minor variants analysis

enhancementNew feature or requestNew feature or request

Status: Open.

#165 In TORCH-Consortium/MAGMA;

· vrennie opened on Aug 9, 2023

Add info about the sequencing tech TAG and reflect that on the reports

enhancementNew feature or requestNew feature or request

Status: Open.

#150 In TORCH-Consortium/MAGMA;

· abhi18av opened on Apr 4, 2023

Remove old fastq.STATUS.tsv files

Status: Open.

#144 In TORCH-Consortium/MAGMA;

· LennertVerboven opened on Feb 20, 2023

Thread for possible enhancements in future

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

wish list

Status: Open.

#120 In TORCH-Consortium/MAGMA;

· abhi18av opened on Aug 30, 2022

[Input samplesheet validation] Sample names with point can result in accidental sample merge

Status: Open.

#102 In TORCH-Consortium/MAGMA;

· TimHHH opened on May 24, 2022

 ·  

v1.0.0

Publish a condensed MultiQC report with the relevant statistics

enhancementNew feature or requestNew feature or request

priority

Status: Open.

#99 In TORCH-Consortium/MAGMA;

· abhi18av opened on May 17, 2022

 ·  

v1.2.0

Coordinates for Structural Varinats in DR (post-release small issues)

Status: Open.

#93 In TORCH-Consortium/MAGMA;

· TimHHH opened on Mar 28, 2022

Retry the GATK_VARIANT_RECALIBRATOR with reduced gaussians on failure

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#73 In TORCH-Consortium/MAGMA;

· abhi18av opened on Feb 10, 2022

 ·  

v0.9.8