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Problem in gvcf interplay between clair3 and gatk

Status: Open.

#354 In HKU-BAL/Clair3;

· johannesgeibel opened on Jan 6, 2025

Loosen the parallel 20191122.* bioconda pin

enhancementNew feature or requestNew feature or request

Status: Open.

#347 In HKU-BAL/Clair3;

· BioWilko opened on Nov 21, 2024

show more allele counts in INFO

enhancementNew feature or requestNew feature or request

Status: Open.

#320 In HKU-BAL/Clair3;

· hoyonh opened on Jul 12, 2024

choose pileup call over full-alignment call if pileup call has 1) a way higher QUAL, 2) is an indel

enhancementNew feature or requestNew feature or request

Status: Open.

#318 In HKU-BAL/Clair3;

· drtconway opened on Jul 2, 2024

Incorrect SNP representation when it overlaps a deletion

enhancementNew feature or requestNew feature or request

Status: Open.

#272 In HKU-BAL/Clair3;

· ymcki opened on Feb 23, 2024

Send adjacent SNP and Indel candidates both to full-alignment model

enhancementNew feature or requestNew feature or request

Status: Open.

#260 In HKU-BAL/Clair3;

· haraldgrove opened on Jan 10, 2024

Variant not detected within 16bp from the start/end

enhancementNew feature or requestNew feature or request

Status: Open.

#257 In HKU-BAL/Clair3;

· peterk87 opened on Dec 19, 2023