Skip to content

Genematics/clinical-image-data-sources

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
 
 
 
 
 
 

Repository files navigation

Clinical Image Data Sources

All sources provided by this list are deemed useful or relevant for the Genematics Imaging Project, where each license and availability has been checked.

Source: The name of the database, dataset or publisher

Data Types: Types of images found in this source.

  • XR: Plain Xray
  • CT: CT scan
  • MR: MRI scan
  • US: Ultrasound
  • PE: PET scan

Data Focus: Focus of body parts that are imaged.

Images: Amount of images in this data source.

patients: Amount of patients that contributed to this data source.

Availability: Requirements for accessing this data source.

License: The license and restricions for this data source.

Link: Direct URL to the data source or apply form where possible.

Unknown values are annotated as X.

Source Data Types Data Focus Images Patients Availability License Link
Alzheimer's Disease Neuroimaging Initiative (ADNI) MR, PE Brain X X Request on application form Non-commercial, non-modify, non-distribute http://adni.loni.usc.edu/data-samples/access-data/
AMRG Atlas MR Heart 78 1 Request on application form Non-commercial, non-modify, non-distribute http://www.cardiacatlas.org/studies/amrg-cardiac-atlas/
Autism Brain Imaging Data Exchange (ABIDE) MR Brain X 539 Registration Non-commercial http://preprocessed-connectomes-project.org/abide/
Belarus Tuberculosis Portal XR, CT Lungs X 500+ Open Non-commercial tuberculosis.by
CHD Atlas MR Heart X X Request on application form Non-commercial, non-modify, non-distribute http://www.cardiacatlas.org/studies/chd-atlas/
DETERMINE MR Heart X X Request on application form Non-commercial, non-modify, non-distribute http://www.cardiacatlas.org/studies/determine/
Digital Database for Screening Mammography (DDSM) XR All X 2620 Open Primarily research and algorithm development http://marathon.csee.usf.edu/Mammography/Database.html
Digital Retinal Images for Vessel Extraction (DRIVE) MR Heart X 400 Registration Non-commercial, non-modify, non-distribute https://www.isi.uu.nl/Research/Databases/DRIVE/download.php
Initiative for Collaborative Computer Vision Benchmarking (Prostate) MR Prostate X X Open MIT license https://zenodo.org/record/162231#.Wg6gyGRaOUm
Japanese Society of Radiological Technology Database (JSRT) CT Lungs 250+ 250+ Registration Non-commercial, non-distribute http://db.jsrt.or.jp/eng.php
MedPix XR, CT, MR, US, PE All 53,000+ 13,000+ Registration Personal use only, including local private distribution https://medpix.nlm.nih.gov/home
MESA MR Heart X 6,500+ Registration Non-commercial, non-modify, non-distribute https://www.mesa-nhlbi.org
Montgomery County X-ray Set MR Lungs 138 X Open MIT license https://ceb.nlm.nih.gov/repositories/tuberculosis-chest-x-ray-image-data-sets/
OASIS MR Brain 373 186 Registration Modify and distribute on creator agreement http://www.oasis-brains.org
Osirix DICOM Library CT, MR, PE All X X Monthly subscription Non-commercial, non-distribute http://www.osirix-viewer.com/resources/dicom-image-library/
SCMR Consensus Data MR All 193¹ 15 Request on application form Non-commercial, non-modify, non-distribute http://www.cardiacatlas.org/studies/scmr-consensus-data/
Shenzhen chest X-ray set CT Lungs 662 X Open MIT license https://ceb.nlm.nih.gov/repositories/tuberculosis-chest-x-ray-image-data-sets/
Sunnybrook Cardiac Data(SCD) MR Heart X 46 Request on application form Non-commercial, non-modify, non-distribute http://www.cardiacatlas.org/studies/sunnybrook-cardiac-data/
The Cancer Imaging Archive (TCIA) XR, CT, MR, US, PE All X 40,000+ Open Non-modify, additional restrictions on certain sub datasets http://www.cancerimagingarchive.net
¹ Amount of MRI slices