Muscle-specific splicing enhancers regulate inclusion of the cardiac troponin T alternative exon in embryonic skeletal muscle
- PMID: 8754799
- PMCID: PMC231397
- DOI: 10.1128/MCB.16.8.4014
Muscle-specific splicing enhancers regulate inclusion of the cardiac troponin T alternative exon in embryonic skeletal muscle
Abstract
The alternative exon 5 of the striated muscle-specific cardiac troponin T (cTNT) gene is included in mRNA from embryonic skeletal and cardiac muscle and excluded in mRNA from the adult. The embryonic splicing pattern is reproduced in primary skeletal muscle cultures for both the endogenous gene and transiently transfected minigenes, whereas in nonmuscle cell lines, minigenes express a default exon skipping pattern. Using this experimental system, we previously showed that a purine-rich splicing enhancer in the alternative exon functions as a constitutive splicing element but not as a target for factors regulating cell-specific splicing. In this study, we identify four intron elements, one located upstream,and three located downstream of the alternative exon, which act in a positive manner to mediate the embryonic splicing pattern of exon inclusion. Synergistic interactions between at least three of the four elements are necessary and sufficient to regulate splicing of a heterologous alternative exon and heterologous splice sites. Mutations in these elements prevent activation of exon inclusion in muscle cells but do not affect the default level of exon inclusion in nonmuscle cells. Therefore, these elements function as muscle-specific splicing enhancers (MSEs) and are the first muscle-specific positive-acting splicing elements to be described. One MSE located downstream from the alternative exon is conserved in the rat and chicken cTNT genes. A related sequence is found in a third muscle-specific gene, that encoding skeletal troponin T, downstream from an alternative exon with a developmental pattern of alternative splicing similar to that of rat and chicken cTNT. Therefore, the MSEs identified in the cTNT gene may play a role in developmentally regulated alternative splicing in a number of different genes.
Similar articles
-
Muscle-specific splicing of a heterologous exon mediated by a single muscle-specific splicing enhancer from the cardiac troponin T gene.Mol Cell Biol. 1998 Aug;18(8):4519-25. doi: 10.1128/MCB.18.8.4519. Mol Cell Biol. 1998. PMID: 9671461 Free PMC article.
-
The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing.Mol Cell Biol. 2001 Feb;21(4):1285-96. doi: 10.1128/MCB.21.4.1285-1296.2001. Mol Cell Biol. 2001. PMID: 11158314 Free PMC article.
-
The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element.Mol Cell Biol. 1993 Jun;13(6):3660-74. doi: 10.1128/mcb.13.6.3660-3674.1993. Mol Cell Biol. 1993. PMID: 8388541 Free PMC article.
-
Tissue-specific splicing of two mutually exclusive exons of the chicken beta-tropomyosin pre-mRNA: positive and negative regulations.Biochimie. 1996;78(6):457-65. doi: 10.1016/0300-9084(96)84752-3. Biochimie. 1996. PMID: 8915535 Review.
-
Alternative splicing: role of pseudoexons in human disease and potential therapeutic strategies.FEBS J. 2010 Feb;277(4):841-55. doi: 10.1111/j.1742-4658.2009.07520.x. Epub 2010 Jan 15. FEBS J. 2010. PMID: 20082636 Review.
Cited by
-
Region-specific alternative splicing in the nervous system: implications for regulation by the RNA-binding protein NAPOR.RNA. 2002 May;8(5):671-85. doi: 10.1017/s1355838202027036. RNA. 2002. PMID: 12022233 Free PMC article.
-
Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing.Nucleic Acids Res. 2001 Jun 1;29(11):2338-48. doi: 10.1093/nar/29.11.2338. Nucleic Acids Res. 2001. PMID: 11376152 Free PMC article.
-
Alternative Pre-mRNA Splicing of the Mu Opioid Receptor Gene, OPRM1: Insight into Complex Mu Opioid Actions.Biomolecules. 2021 Oct 15;11(10):1525. doi: 10.3390/biom11101525. Biomolecules. 2021. PMID: 34680158 Free PMC article. Review.
-
CA- and purine-rich elements form a novel bipartite exon enhancer which governs inclusion of the minute virus of mice NS2-specific exon in both singly and doubly spliced mRNAs.Mol Cell Biol. 1999 Jan;19(1):364-75. doi: 10.1128/MCB.19.1.364. Mol Cell Biol. 1999. PMID: 9858560 Free PMC article.
-
U1 snRNP-dependent function of TIAR in the regulation of alternative RNA processing of the human calcitonin/CGRP pre-mRNA.Mol Cell Biol. 2003 Sep;23(17):5959-71. doi: 10.1128/MCB.23.17.5959-5971.2003. Mol Cell Biol. 2003. PMID: 12917321 Free PMC article.
References
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Research Materials