Inhibition of transcription initiation by lac repressor
- PMID: 7837267
- DOI: 10.1006/jmbi.1994.0028
Inhibition of transcription initiation by lac repressor
Abstract
Initiation of transcription of the lac operon by RNA polymerase (R) is inhibited by binding of lac repressor (L) to an operator site which overlaps the lac promoter (P). We have investigated repression of the lac UV5 promoter in vitro for a choice of the repressor--operator binding constant and ranges of thermodynamic activities of L and R which appear to be relevant in vivo. Effects of [L] on the extent of formation and the kinetics of association and dissociation of abortively-initiating open complexes (RPinit) were examined using fluorescence detected abortive initiation and KMnO4 chemical probing. The nitrocellulose filter assay was used to measure the dissociation rate constant and the equilibrium constant for binding for L to its operator site in the absence of R. For the chosen solution conditions, we find that both the observed velocity of abortive RNA oligomer synthesis and the KMnO4 reactivities of bases in the open region are functions of [L] and [R], demonstrating that formation of both RPinit and the repressor-operator complex (PL) are reversible processes under these conditions, and requiring the use of a relaxation-to-equilibrium analysis to interpret the kinetics. The agreement between dissociation rate constants of RPinit when challenged with either lac repressor or heparin, and the dependences on [L] and [R] of abortive synthesis velocities at binding equilibrium and of relaxation rate constants for reversible formation of RPinit from PL, all provide evidence for a simple competition mechanism. In this mechanism, and in contrast to recent proposals from other laboratories, lac repressor inhibits formation of RPinit and hence the observed rate of abortive product synthesis by reducing the equilibrium extent of formation of the first closed complex (RPc1), without affecting either the nature of RPinit or steps in formation of RPinit from RPc1.
Similar articles
-
KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo.J Biol Chem. 1989 May 15;264(14):8074-81. J Biol Chem. 1989. PMID: 2722774
-
The interaction of RNA polymerase and lac repressor with the lac control region.Nucleic Acids Res. 1979 Jan;6(1):111-37. doi: 10.1093/nar/6.1.111. Nucleic Acids Res. 1979. PMID: 370784 Free PMC article.
-
lacP1 promoter with an extended -10 motif. Pleiotropic effects of cyclic AMP protein at different steps of transcription initiation.J Biol Chem. 2004 Dec 24;279(52):54552-7. doi: 10.1074/jbc.M408609200. Epub 2004 Sep 22. J Biol Chem. 2004. PMID: 15385551
-
Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.J Mol Biol. 1997 Apr 18;267(5):1186-206. doi: 10.1006/jmbi.1997.0920. J Mol Biol. 1997. PMID: 9150406
-
Ions as regulators of protein-nucleic acid interactions in vitro and in vivo.Adv Biophys. 1985;20:109-35. doi: 10.1016/0065-227x(85)90033-4. Adv Biophys. 1985. PMID: 3914831 Review.
Cited by
-
Operator sequence alters gene expression independently of transcription factor occupancy in bacteria.Cell Rep. 2012 Jul 26;2(1):150-61. doi: 10.1016/j.celrep.2012.06.004. Epub 2012 Jul 12. Cell Rep. 2012. PMID: 22840405 Free PMC article.
-
Glucose sensing and signaling by two glucose receptors in the yeast Saccharomyces cerevisiae.EMBO J. 1998 May 1;17(9):2566-73. doi: 10.1093/emboj/17.9.2566. EMBO J. 1998. PMID: 9564039 Free PMC article.
-
DNA trajectory in the Gal repressosome.Genes Dev. 2004 Aug 1;18(15):1898-907. doi: 10.1101/gad.1209404. Genes Dev. 2004. PMID: 15289461 Free PMC article.
-
Artificial repressors for controlling gene expression in bacteria.Chem Commun (Camb). 2013 May 14;49(39):4325-7. doi: 10.1039/c2cc37107c. Epub 2012 Dec 10. Chem Commun (Camb). 2013. PMID: 23230569 Free PMC article.
-
Dissecting the functional program of Escherichia coli promoters: the combined mode of action of Lac repressor and AraC activator.Nucleic Acids Res. 2001 Sep 15;29(18):3873-81. doi: 10.1093/nar/29.18.3873. Nucleic Acids Res. 2001. PMID: 11557820 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources