This site needs JavaScript to work properly. Please enable it to take advantage of the complete set of features!

Skip to main page content

Email citation

Add to Collections

Your saved search

Name of saved search:

Search terms:

Test search terms

Would you like email updates of new search results?

Yes
No

Email: (change)

Frequency:

Which day?

Which day?

Report format:

Send at most:

Send even when there aren't any new results

Optional text in email:

Your RSS Feed

. 1980 Feb 25;8(4):817-25.

A computer program to search for tRNA genes

R Staden

PMID: 7433117
PMCID: PMC327313

A computer program to search for tRNA genes

R Staden. Nucleic Acids Res. 1980.

. 1980 Feb 25;8(4):817-25.

Author

R Staden

PMID: 7433117
PMCID: PMC327313

Abstract

This paper describes a computer program that can find tRNA genes within long DNA sequences. The program obviates the need to map the tRNA genes.

PubMed Disclaimer

Similar articles

Evolution of tRNA-like sequences and genome variability.
Frenkel FE, Chaley MB, Korotkov EV, Skryabin KG. Frenkel FE, et al. Gene. 2004 Jun 23;335:57-71. doi: 10.1016/j.gene.2004.03.005. Gene. 2004. PMID: 15194190
Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.
Soma A, Onodera A, Sugahara J, Kanai A, Yachie N, Tomita M, Kawamura F, Sekine Y. Soma A, et al. Science. 2007 Oct 19;318(5849):450-3. doi: 10.1126/science.1145718. Science. 2007. PMID: 17947580
SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level.
Sugahara J, Yachie N, Sekine Y, Soma A, Matsui M, Tomita M, Kanai A. Sugahara J, et al. In Silico Biol. 2006;6(5):411-8. In Silico Biol. 2006. PMID: 17274770
Indirect readout of tRNA for aminoacylation.
Perona JJ, Hou YM. Perona JJ, et al. Biochemistry. 2007 Sep 18;46(37):10419-32. doi: 10.1021/bi7014647. Epub 2007 Aug 24. Biochemistry. 2007. PMID: 17718520 Review.
Compilation of tRNA sequences and sequences of tRNA genes.
Sprinzl M, Hartmann T, Meissner F, Moll J, Vorderwülbecke T. Sprinzl M, et al. Nucleic Acids Res. 1987;15 Suppl(Suppl):r53-188. doi: 10.1093/nar/15.suppl.r53. Nucleic Acids Res. 1987. PMID: 3554146 Free PMC article. Review. No abstract available.

See all similar articles

Cited by

Characterization of a large chromosomal "high-pathogenicity island" in biotype 1B Yersinia enterocolitica.
Carniel E, Guilvout I, Prentice M. Carniel E, et al. J Bacteriol. 1996 Dec;178(23):6743-51. doi: 10.1128/jb.178.23.6743-6751.1996. J Bacteriol. 1996. PMID: 8955291 Free PMC article.
New approaches for computer analysis of nucleic acid sequences.
Karlin S, Ghandour G, Ost F, Tavare S, Korn LJ. Karlin S, et al. Proc Natl Acad Sci U S A. 1983 Sep;80(18):5660-4. doi: 10.1073/pnas.80.18.5660. Proc Natl Acad Sci U S A. 1983. PMID: 6577449 Free PMC article.
tRNA genes transcribed from the plastid-like DNA of Plasmodium falciparum.
Preiser P, Williamson DH, Wilson RJ. Preiser P, et al. Nucleic Acids Res. 1995 Nov 11;23(21):4329-36. doi: 10.1093/nar/23.21.4329. Nucleic Acids Res. 1995. PMID: 7501453 Free PMC article.
An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.
Staden R. Staden R. Nucleic Acids Res. 1982 May 11;10(9):2951-61. doi: 10.1093/nar/10.9.2951. Nucleic Acids Res. 1982. PMID: 7099970 Free PMC article.
Mitochondrial plasmid DNAs of broad bean: nucleotide sequences, complex secondary structures, and transcription.
Wahleithner JA, Wolstenholme DR. Wahleithner JA, et al. Curr Genet. 1987;12(1):55-67. doi: 10.1007/BF00420728. Curr Genet. 1987. PMID: 2835174

See all "Cited by" articles

References

1. Proc Natl Acad Sci U S A. 1977 Oct;74(10):4401-5 - PubMed
1. Nucleic Acids Res. 1977 Nov;4(11):4037-51 - PubMed
1. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5453-7 - PubMed
1. Proc Natl Acad Sci U S A. 1978 Jan;75(1):190-4 - PubMed
1. Nucleic Acids Res. 1978 Mar;5(3):1013-6 - PubMed

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

Substances

Actions
Actions

LinkOut - more resources

Full Text Sources
- Europe PubMed Central
- PubMed Central
Medical
- MedlinePlus Health Information