The histone core complex: an octamer assembled by two sets of protein-protein interactions
- PMID: 718868
- DOI: 10.1021/bi00616a016
The histone core complex: an octamer assembled by two sets of protein-protein interactions
Abstract
A protein complex, extracted from calf thymus chromatin with 2 M NaCl, pH 7.5, containing approximately equal molar ratios of histones H2A, H2B, H3, and H4, has been characterized in this study. Gel filtration, sedimentation velocity, and sedimentation equilibrium experiments demonstrate that this complex, known as the core complex, has a molecular weight near that expected for a histone octamer (108 000 for a unit containing two each of the four inner histones) and far exceeding that of a histone tetramer (54 400). This finding suggests that the histone octamer, postulated to be the fundamental histone unit in chromatin, is stable in 2 M NaCl, pH 7.5, in the absence of DNA or chemical cross-linking reagents. In the second part of this study, we demonstrate that the bonds maintaining the octameric complex in 2 M NaCl are weak and distinctly different from the forces stabilizing the H2A-H2B dimer or H3-H4 tetramer. The octamer is dissociated into two H2A-H2B dimers and one H3-H4 tetramer by (i) increasing temperature; (ii) decreasing NaCl concentration; (iii) adding low concentrations of urea or guanidine hydrochloride; and (iv) lowering the pH below 7 or raising it above 10. These findings indicate that the octamer is assembled by two sets-of protein-protein interactions. The first set involves mostly hydrophobic interactions and yields the H2A-H2B dimer and the H3-H4 tetramer subunits. The second set involves the weak association of one H3-H4 tetramer with two H2A-H2B dimers to form an octamer. We suggest that these weak interactions might be derived predominantly from histidine-lysine or histidine-tyrosine hydrogen bonds between the dimer and tetramer subunits.
Similar articles
-
UV differential study of the histones H2A-H2B-H3-H4 octamer.Biochimie. 1982 May;64(5):347-55. doi: 10.1016/s0300-9084(82)80439-2. Biochimie. 1982. PMID: 7104402
-
[Stages of assembly and structural forms of histone oligomers-- (H2A-H2B) dimer, (H3-H4)2 tetramer and (H3-H4-H2A-H2B)2 octamer].Ukr Biokhim Zh (1978). 1984 Nov-Dec;56(6):603-8. Ukr Biokhim Zh (1978). 1984. PMID: 6515728 Russian.
-
Characterization of the histone core complex.Proc Natl Acad Sci U S A. 1978 Apr;75(4):1680-4. doi: 10.1073/pnas.75.4.1680. Proc Natl Acad Sci U S A. 1978. PMID: 273898 Free PMC article.
-
All roads lead to chromatin: multiple pathways for histone deposition.Biochim Biophys Acta. 2013 Mar-Apr;1819(3-4):238-46. Biochim Biophys Acta. 2013. PMID: 24459726 Review.
-
Roles of Histone H2B, H3 and H4 Variants in Cancer Development and Prognosis.Int J Mol Sci. 2024 Sep 7;25(17):9699. doi: 10.3390/ijms25179699. Int J Mol Sci. 2024. PMID: 39273649 Free PMC article. Review.
Cited by
-
DNA sequence selection by tightly-bound nonhistone chromosomal proteins.Nucleic Acids Res. 1979 Apr;6(4):1617-30. doi: 10.1093/nar/6.4.1617. Nucleic Acids Res. 1979. PMID: 450709 Free PMC article.
-
Initiating base excision repair in chromatin.DNA Repair (Amst). 2018 Nov;71:87-92. doi: 10.1016/j.dnarep.2018.08.011. Epub 2018 Aug 24. DNA Repair (Amst). 2018. PMID: 30170831 Free PMC article. Review.
-
The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study.PLoS Comput Biol. 2021 Jul 27;17(7):e1009253. doi: 10.1371/journal.pcbi.1009253. eCollection 2021 Jul. PLoS Comput Biol. 2021. PMID: 34314440 Free PMC article.
-
Drug-induced anti-histone autoantibodies display two patterns of reactivity with substructures of chromatin.J Clin Invest. 1991 Aug;88(2):680-90. doi: 10.1172/JCI115353. J Clin Invest. 1991. PMID: 1864977 Free PMC article.
-
Nucleosome dissociation and transfer in concentrated salt solutions.Nucleic Acids Res. 1979 Dec 20;7(8):2457-67. doi: 10.1093/nar/7.8.2457. Nucleic Acids Res. 1979. PMID: 523323 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Other Literature Sources
Molecular Biology Databases