Folding of prokaryotic DNA. Isolation and characterization of nucleoids from Bacillus licheniformis
- PMID: 6188837
- DOI: 10.1016/0022-2836(83)90007-4
Folding of prokaryotic DNA. Isolation and characterization of nucleoids from Bacillus licheniformis
Abstract
Intact and fast-sedimenting nucleoids of Bacillus licheniformis were isolated under low-salt conditions and without addition of detergents, polyamines or Mg2+. These nucleoids were partially unfolded by treatment with RNase and completely unfolded by treatments that disrupt protein-DNA interactions, like incubation with proteinase K, 0.1% sodium dodecyl sulphate and high ionic strength. Ethidium bromide intercalation studies on RNase-treated, proteinase-K-treated and non-treated nucleoids in combination with sedimentation analysis of DNase-I-treated nucleoids revealed that DNA is organized in independent, negatively supertwisted domains. In contrast to the DNA organization in bacterial nucleoids, isolated under high-salt conditions and in the presence of detergents (Stonington & Pettijohn, 1971; Worcel & Burgi, 1972), the domains of supertwisted DNA in the low-salt-isolated nucleoids studied here are restrained by protein-DNA interactions. A major role for nascent RNA in restraining supertwisted DNA was not observed. The superhelix density of B. licheniformis nucleoids calculated from the change of the sedimentation coefficient upon ethidium bromide intercalation, was of the same order of magnitude as that of other bacterial nucleoids and eukaryotic chromosomes, isolated under high-salt conditions: namely, -0.150 (corrected to standard conditions: 0.2 M-NaCl, 37 degrees C; Bauer, 1978). Electron microscopy of spread nucleoids showed relaxed DNA and regions of condensed DNA. Spreading in the presence of 100 micrograms ethidium bromide per ml revealed only condensed structures, indicating that nucleoids are intact. From spreadings of proteinase-K-treated nucleoids we infer that supertwisted DNA and the protein-DNA interactions, responsible for restraining the superhelical DNA conformation, are localized in the regions of condensed DNA.
Similar articles
-
Characterization, assay, and use of isolated bacterial nucleoids.Methods Biochem Anal. 1982;28:297-328. doi: 10.1002/9780470110485.ch7. Methods Biochem Anal. 1982. PMID: 6178944 Review. No abstract available.
-
Multiple restraints to the unfolding of spermidine nucleoids from Escherichia coli.J Struct Biol. 2000 Oct;132(1):46-62. doi: 10.1006/jsbi.2000.4306. J Struct Biol. 2000. PMID: 11121306
-
Changes in DNA topology during spermatogenesis.Chromosoma. 1986;94(3):217-27. doi: 10.1007/BF00288496. Chromosoma. 1986. PMID: 3490360
-
Assimilation of single-stranded donor deoxyribonucleic acid fragments by nucleoids of competent cultures of Bacillus subtilis.J Bacteriol. 1981 Mar;145(3):1177-88. doi: 10.1128/jb.145.3.1177-1188.1981. J Bacteriol. 1981. PMID: 6782088 Free PMC article.
-
Isolation of the Escherichia coli nucleoid.Biochimie. 2001 Feb;83(2):149-54. doi: 10.1016/s0300-9084(01)01245-7. Biochimie. 2001. PMID: 11278063 Review.
Cited by
-
The Bacterial Nucleoid: From Electron Microscopy to Polymer Physics-A Personal Recollection.Life (Basel). 2023 Mar 28;13(4):895. doi: 10.3390/life13040895. Life (Basel). 2023. PMID: 37109423 Free PMC article. Review.
-
Facilitated Dissociation of a Nucleoid Protein from the Bacterial Chromosome.J Bacteriol. 2016 May 27;198(12):1735-42. doi: 10.1128/JB.00225-16. Print 2016 Jun 15. J Bacteriol. 2016. PMID: 27044624 Free PMC article.
-
Bacterial nucleoid is a riddle wrapped in a mystery inside an enigma.J Bacteriol. 2024 Mar 21;206(3):e0021123. doi: 10.1128/jb.00211-23. Epub 2024 Feb 15. J Bacteriol. 2024. PMID: 38358278 Free PMC article. Review.
-
Organization of DNA in a bacterial nucleoid.BMC Microbiol. 2016 Feb 20;16:22. doi: 10.1186/s12866-016-0637-3. BMC Microbiol. 2016. PMID: 26897370 Free PMC article.
-
Atomic Force Microscopy Imaging and Analysis of Prokaryotic Genome Organization.Methods Mol Biol. 2024;2819:263-277. doi: 10.1007/978-1-0716-3930-6_13. Methods Mol Biol. 2024. PMID: 39028511
MeSH terms
Substances
LinkOut - more resources
Full Text Sources