doi: 10.1093/bioinformatics/3.2.111.
A multiple alignment program for protein sequences
Affiliations
- PMID: 3453217
- DOI: 10.1093/bioinformatics/3.2.111
Item in Clipboard
A multiple alignment program for protein sequences
Comput Appl Biosci.
1987 Jun.
Abstract
A program for the multiple alignment of protein sequences is presented. The program is an extension of the fast alignment program by Wilbur et al. (1984) into higher dimensions. The use of hash procedures on fragments of the protein sequences increases the speed of calculation. Thereby we also take into account fragments which are present in some, but not in all, sequences considered. The results of some multiple alignments are given.
Similar articles
-
Using CLUSTAL for multiple sequence alignments.Methods Enzymol. 1996;266:383-402. doi: 10.1016/s0076-6879(96)66024-8. Methods Enzymol. 1996. PMID: 8743695
-
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.BMC Bioinformatics. 2005 Jun 22;6:156. doi: 10.1186/1471-2105-6-156. BMC Bioinformatics. 2005. PMID: 15969769 Free PMC article.
-
Multiple DNA and protein sequence alignment based on segment-to-segment comparison.Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12098-103. doi: 10.1073/pnas.93.22.12098. Proc Natl Acad Sci U S A. 1996. PMID: 8901539 Free PMC article.
-
Protein multiple sequence alignment.Methods Mol Biol. 2008;484:379-413. doi: 10.1007/978-1-59745-398-1_25. Methods Mol Biol. 2008. PMID: 18592193 Review.
-
Finding homologs to nucleic acid or protein sequences using the framesearch program.Curr Protoc Bioinformatics. 2002 Aug;Chapter 3:Unit 3.2. doi: 10.1002/0471250953.bi0302s00. Curr Protoc Bioinformatics. 2002. PMID: 18792937 Review.
Cited by
-
Multiple sequence alignment with hierarchical clustering.Nucleic Acids Res. 1988 Nov 25;16(22):10881-90. doi: 10.1093/nar/16.22.10881. Nucleic Acids Res. 1988. PMID: 2849754 Free PMC article.
-
Consistency of optimal sequence alignments.Bull Math Biol. 1990;52(4):509-25. doi: 10.1007/BF02462264. Bull Math Biol. 1990. PMID: 1697773
-
A flexible method to align large numbers of biological sequences.J Mol Evol. 1988 Dec-1989 Feb;28(1-2):161-9. doi: 10.1007/BF02143508. J Mol Evol. 1988. PMID: 3148736