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Review
. 2017 Sep 24;474(19):3355-3371.
doi: 10.1042/BCJ20160809.

Regulating protein breakdown through proteasome phosphorylation

Affiliations
Review

Regulating protein breakdown through proteasome phosphorylation

Jordan J S VerPlank et al. Biochem J. .

Abstract

The ubiquitin proteasome system degrades the great majority of proteins in mammalian cells. Countless studies have described how ubiquitination promotes the selective degradation of different cell proteins. However, there is a small but the growing literature that protein half-lives can also be regulated by post-translational modifications of the 26S proteasome. The present study reviews the ability of several kinases to alter proteasome function through subunit phosphorylation. For example, PKA (protein kinase A) and DYRK2 (dual-specificity tyrosine-regulated kinase 2) stimulate the proteasome's ability to degrade ubiquitinated proteins, peptides, and adenosine triphosphate, while one kinase, ASK1 (apoptosis signal-regulating kinase 1), inhibits proteasome function during apoptosis. Proteasome phosphorylation is likely to be important in regulating protein degradation because it occurs downstream from many hormones and neurotransmitters, in conditions that raise cyclic adenosine monophosphate or cyclic guanosine monophosphate levels, after calcium influx following synaptic depolarization, and during phases of the cell cycle. Beyond its physiological importance, pharmacological manipulation of proteasome phosphorylation has the potential to combat various diseases. Inhibitors of phosphodiesterases by activating PKA or PKG (protein kinase G) can stimulate proteasomal degradation of misfolded proteins that cause neurodegenerative or myocardial diseases and even reduce the associated pathology in mouse models. These observations are promising since in many proteotoxic diseases, aggregation-prone proteins impair proteasome function, and disrupt protein homeostasis. Conversely, preventing subunit phosphorylation by DYRK2 slows cell cycle progression and tumor growth. However, further research is essential to determine how phosphorylation of different subunits by these (or other) kinases alters the properties of this complex molecular machine and thus influence protein degradation rates.

Keywords: proteasome activation; proteasome phosphorylation; protein degradation; protein homeostasis; protein kinase; ubiquitin proteasome system.

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Figures

Figure 1
Figure 1. Structures of the 26S proteasome
A.) The 26S proteasome is composed of the 20S core particle and a 19S regulatory particle attached to one or both ends. The 20S has seven α subunits (light blue), whose N-termini form a gate that prevents nonspecific protein degradation, and seven β subunits (dark blue), three of which contain proteolytic active sites with distinct substrate preference (indicated). The 19S has six ATPase subunits (Rpt 1-6) (orange), which unfold and translocate substrates in an ATP-dependent manner into the 20S for proteolysis. Three of these ATPase subunits (Rpt 3, 5, and 6) are reported to be phosphorylated by kinases discussed here. Rpn6 is phosphorylated by PKA and is unusual because it interacts with subunits of both the 19S ATPase ring and 20S α ring. B.) A ubiquitinated substrate is bound by one of the ubiquitin receptor subunits. If the substrate has an unstructured region, it becomes tightly bound by the proteasome, committed to degradation, and the 19S ATPase subunits (Rpt 1 - 6) are activated. Degradation does not occur every time a ubiquitinated substrate binds the proteasome because deubiqutination can occur prior to the commitment step, resulting in substrate release. If committed to degradation, the substrate is translocated in an ATP-dependent manner into the 20S where it is hydrolyzed to small peptides by the three proteolytic sites. It is currently unknown how phosphorylation of a subunit either speeds up or slows down this degradation process.
Figure 2
Figure 2. Our present understanding of proteasome activation by cAMP and cGMP
A.) Hormones and compounds that raise intracellular cAMP cause PKA to phosphorylate the proteasome on 19S subunit Rpn6. The phosphorylated proteasome is more active and degrades faster short-lived proteins in all examined cells, including defined UPS model substrates and mutant proteins that cause neurodegenerative diseases. B.) PDE5 inhibitors and cardiac M2 muscarinic receptor agonists raise intracellular cGMP and activate PKG in hearts and cultured primary cardiomyocytes. PKG phosphorylates proteasome subunits and stimulates the degradation of a mutant αβCrystallin, which causes desmin-related cardiomyopathy, and the defined UPS substrate GFP-CL1.
Figure 3
Figure 3
Phosphorylation by DYRK2 of the proteasome 19S subunit Rpt3 during S, M, and G2 phases of the cell cycle. These phosphorylated proteasomes are more active and degrade faster long-lived proteins as well as two cyclin-dependent kinase inhibitors that inhibit the transition from G1 to S phase: p21Cip1 and p27Kip1.

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