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Review
. 2017 Jan 27:6:82.
doi: 10.12688/f1000research.9828.1. eCollection 2017.

Human parvovirus 4 'PARV4' remains elusive despite a decade of study

Affiliations
Review

Human parvovirus 4 'PARV4' remains elusive despite a decade of study

Philippa C Matthews et al. F1000Res. .

Abstract

Human parvovirus 4 ('PARV4') is a small DNA tetraparvovirus, first reported in 2005. In some populations, PARV4 infection is uncommon, and evidence of exposure is found only in individuals with risk factors for parenteral infection who are infected with other blood-borne viruses. In other settings, seroprevalence studies suggest an endemic, age-associated transmission pattern, independent of any specific risk factors. The clinical impact of PARV4 infection remains uncertain, but reported disease associations include an influenza-like syndrome, encephalitis, acceleration of HIV disease, and foetal hydrops. In this review, we set out to report progress updates from the recent literature, focusing on the investigation of cohorts in different geographical settings, now including insights from Asia, the Middle East, and South America, and discussing whether attributes of viral or host populations underpin the striking differences in epidemiology. We review progress in understanding viral phylogeny and biology, approaches to diagnostics, and insights that might be gained from studies of closely related animal pathogens. Crucial questions about pathogenicity remain unanswered, but we highlight new evidence supporting a possible link between PARV4 and an encephalitis syndrome. The unequivocal evidence that PARV4 is endemic in certain populations should drive ongoing research efforts to understand risk factors and routes of transmission and to gain new insights into the impact of this virus on human health.

Keywords: Human parvovirus 4; PARV4; PARV4 biology; PARV4 phylogeny; tetraparvovirus.

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Conflict of interest statement

The authors declare that they have no competing interests. No competing interests were disclosed. No competing interests were disclosed. No competing interests were disclosed.

Figures

Figure 1.
Figure 1.. Cartoon depicting potential clinical associations of human parvovirus 4 (PARV4).
The references for each of these are provided in Table 1. The question marks highlight that robust and consistent evidence is still lacking for all of these associations. GI, gastrointestinal; HIV, human immunodeficiency virus.
Figure 2.
Figure 2.. Variability scan of human parvovirus 4 (PARV4) genomes, showing mean pairwise nucleotide distances of sequential 250 base fragments, incrementing by 25 bases between data points.
Sequence comparisons were between 10 genotype-1 (DQ873386, DQ873387, DQ873388, DQ873389, EU175856, EU200667, EU546204, EU546210, EU546211, and NC007018), 13 genotype-2 (DQ873390, DQ873391, EU175855, EU546205, EU546206, EU546207, HQ593530, HQ593532, KJ541119, KJ541120, KJ541121, KM390024, and KM390025), and seven genotype-3 (EU874248, JN798193, JN798194, JN798195, JN798196, KU871314, and KU871315) complete or near complete genome sequences. A genome diagram drawn to scale is included showing the main non-structural (NS, ORF1) and structural (VP, ORF2) gene coding regions as well as the positions of the additional reading frames (ARF1 and ARF2) embedded in ORF2. All nucleotide positions are numbered based on the reference sequence NC007018. It is striking that the region containing the two small ORFs is the most conserved of the whole genome; this may be in part a general feature of ORFs (where less flexibility is likely to be tolerated) but could also point to an important structural or functional role of this region. ORF, open reading frame.
Figure 3.
Figure 3.. Phylogeny of published complete or near complete human parvovirus 4 (PARV4) genome sequences as inferred from complete NS (ORF1) nucleotide sequences (equivalent to nucleotides 283–2271 of the reference sequence NC007018).
Sequences published since 2014 are highlighted with filled circles. The evolutionary history was inferred by using the maximum likelihood model. The optimum maximum likelihood model (lowest Bayesian information criterion score and typically greatest maximum likelihood value for the nucleotide sequence alignment) was first determined and used for phylogenetic reconstruction. This was the Tamura 3-parameter model with a gamma distribution. Bootstrap support of branches (500 replications) is indicated.

References

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