Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase
- PMID: 2682654
- PMCID: PMC298342
- DOI: 10.1073/pnas.86.22.8635
Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase
Abstract
The structure of isocitrate dehydrogenase [threo-DS-isocitrate: NADP+ oxidoreductase (decarboxylating), EC 1.1.1.42] from Escherichia coli has been solved and refined at 2.5 A resolution and is topologically different from that of any other dehydrogenase. This enzyme, a dimer of identical 416-residue subunits, is inactivated by phosphorylation at Ser-113, which lies at the edge of an interdomain pocket that also contains many residues conserved between isocitrate dehydrogenase and isopropylmalate dehydrogenase. Isocitrate dehydrogenase contains an unusual clasp-like domain in which both polypeptide chains in the dimer interlock. Based on the structure of isocitrate dehydrogenase and conservation with isopropylmalate dehydrogenase, we suggest that the active site lies in an interdomain pocket close to the phosphorylation site.
Similar articles
-
Substrate recognition of isocitrate dehydrogenase and 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8.J Biochem. 1997 Jan;121(1):77-81. doi: 10.1093/oxfordjournals.jbchem.a021573. J Biochem. 1997. PMID: 9058195
-
Studies of the phosphorylation of Escherichia coli isocitrate dehydrogenase. Recognition of the enzyme by isocitrate dehydrogenase kinase/phosphatase and effects of phosphorylation on its structure and properties.Biochimie. 1989 Sep-Oct;71(9-10):1059-64. doi: 10.1016/0300-9084(89)90111-9. Biochimie. 1989. PMID: 2557094
-
Thermostability of ancestral mutants of Caldococcus noboribetus isocitrate dehydrogenase.FEMS Microbiol Lett. 2005 Feb 15;243(2):393-8. doi: 10.1016/j.femsle.2004.12.030. FEMS Microbiol Lett. 2005. PMID: 15686840
-
Control of isocitrate dehydrogenase catalytic activity by protein phosphorylation in Escherichia coli.J Mol Microbiol Biotechnol. 2005;9(3-4):132-46. doi: 10.1159/000089642. J Mol Microbiol Biotechnol. 2005. PMID: 16415587 Review.
-
Isocitrate dehydrogenase kinase/phosphatase.Biochimie. 1989 Sep-Oct;71(9-10):1051-7. doi: 10.1016/0300-9084(89)90110-7. Biochimie. 1989. PMID: 2557093 Review.
Cited by
-
Two Different Isocitrate Dehydrogenases from Pseudomonas aeruginosa: Enzymology and Coenzyme-Evolutionary Implications.Int J Mol Sci. 2023 Oct 7;24(19):14985. doi: 10.3390/ijms241914985. Int J Mol Sci. 2023. PMID: 37834433 Free PMC article.
-
Enzymatic Characterization of the Isocitrate Dehydrogenase with Dual Coenzyme Specificity from the Marine Bacterium Umbonibacter marinipuiceus.Int J Mol Sci. 2023 Jul 13;24(14):11428. doi: 10.3390/ijms241411428. Int J Mol Sci. 2023. PMID: 37511187 Free PMC article.
-
Recent advances of IDH1 mutant inhibitor in cancer therapy.Front Pharmacol. 2022 Aug 24;13:982424. doi: 10.3389/fphar.2022.982424. eCollection 2022. Front Pharmacol. 2022. PMID: 36091829 Free PMC article. Review.
-
Investigation of the Importance of Protein 3D Structure for Assessing Conservation of Lysine Acetylation Sites in Protein Homologs.Front Microbiol. 2022 Jan 31;12:805181. doi: 10.3389/fmicb.2021.805181. eCollection 2021. Front Microbiol. 2022. PMID: 35173693 Free PMC article.
-
From a dimer to a monomer: Construction of a chimeric monomeric isocitrate dehydrogenase.Protein Sci. 2021 Dec;30(12):2396-2407. doi: 10.1002/pro.4204. Epub 2021 Oct 23. Protein Sci. 2021. PMID: 34647384 Free PMC article.
References
Publication types
MeSH terms
Substances
Associated data
- Actions
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases