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. 2016 Jan 4;44(D1):D51-7.
doi: 10.1093/nar/gkv1105. Epub 2015 Nov 17.

DNA data bank of Japan (DDBJ) progress report

Jun Mashima  1 , Yuichi Kodama  2 , Takehide Kosuge  2 , Takatomo Fujisawa  2 , Toshiaki Katayama  3 , Hideki Nagasaki  2 , Yoshihiro Okuda  2 , Eli Kaminuma  2 , Osamu Ogasawara  2 , Kousaku Okubo  2 , Yasukazu Nakamura  2 , Toshihisa Takagi  4
Affiliations

DNA data bank of Japan (DDBJ) progress report

Jun Mashima et al. Nucleic Acids Res. .

Abstract

The DNA Data Bank of Japan Center (DDBJ Center; http://www.ddbj.nig.ac.jp) maintains and provides public archival, retrieval and analytical services for biological information. The contents of the DDBJ databases are shared with the US National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute (EBI) within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). Since 2013, the DDBJ Center has been operating the Japanese Genotype-phenotype Archive (JGA) in collaboration with the National Bioscience Database Center (NBDC) in Japan. In addition, the DDBJ Center develops semantic web technologies for data integration and sharing in collaboration with the Database Center for Life Science (DBCLS) in Japan. This paper briefly reports on the activities of the DDBJ Center over the past year including submissions to databases and improvements in our services for data retrieval, analysis, and integration.

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Figures

Figure 1.
Figure 1.
New BioProject/BioSample/DRA submission interface. The new BioProject, BioSample and DRA submission interface enables submission of DRA metadata objects (Submission, Experiment, Run and Analysis) referencing submitted but yet un-accessioned BioProject and BioSample objects. Users can submit new BioProject, BioSample, and DRA metadata at the same time.
Figure 2.
Figure 2.
Screenshot of the DNA Data Bank of Japan (DDBJ) TXSearch tool
See this image and copyright information in PMC

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