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. 2014 Dec 9;5(6):e01708.
doi: 10.1128/mBio.01708-14.

Ribosomal elongation factor 4 promotes cell death associated with lethal stress

Affiliations

Ribosomal elongation factor 4 promotes cell death associated with lethal stress

Liping Li et al. mBio. .

Abstract

Ribosomal elongation factor 4 (EF4) is highly conserved among bacteria, mitochondria, and chloroplasts. However, the EF4-encoding gene, lepA, is nonessential and its deficiency shows no growth or fitness defect. In purified systems, EF4 back-translocates stalled, posttranslational ribosomes for efficient protein synthesis; consequently, EF4 has a protective role during moderate stress. We were surprised to find that EF4 also has a detrimental role during severe stress: deletion of lepA increased Escherichia coli survival following treatment with several antimicrobials. EF4 contributed to stress-mediated lethality through reactive oxygen species (ROS) because (i) the protective effect of a ΔlepA mutation against lethal antimicrobials was eliminated by anaerobic growth or by agents that block hydroxyl radical accumulation and (ii) the ΔlepA mutation decreased ROS levels stimulated by antimicrobial stress. Epistasis experiments showed that EF4 functions in the same genetic pathway as the MazF toxin, a stress response factor implicated in ROS-mediated cell death. The detrimental action of EF4 required transfer-messenger RNA (tmRNA, which tags truncated proteins for degradation and is known to be inhibited by EF4) and the ClpP protease. Inhibition of a protective, tmRNA/ClpP-mediated degradative activity would allow truncated proteins to indirectly perturb the respiratory chain and thereby provide a potential link between EF4 and ROS. The connection among EF4, MazF, tmRNA, and ROS expands a pathway leading from harsh stress to bacterial self-destruction. The destructive aspect of EF4 plus the protective properties described previously make EF4 a bifunctional factor in a stress response that promotes survival or death, depending on the severity of stress.

Importance: Translation elongation factor 4 (EF4) is one of the most conserved proteins in nature, but it is dispensable. Lack of strong phenotypes for its genetic knockout has made EF4 an enigma. Recent biochemical work has demonstrated that mild stress may stall ribosomes and that EF4 can reposition stalled ribosomes to resume proper translation. Thus, EF4 protects cells from moderate stress. Here we report that EF4 is paradoxically harmful during severe stress, such as that caused by antimicrobial treatment. EF4 acts in a pathway that leads to excessive accumulation of reactive oxygen species (ROS), thereby participating in a bacterial self-destruction that occurs when cells cannot effectively repair stress-mediated damage. Thus, EF4 has two opposing functions-at low-to-moderate levels of stress, the protein is protective by allowing stress-paused translation to resume; at high-levels of stress, EF4 helps bacteria self-destruct. These data support the existence of a bacterial live-or-die response to stress.

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Figures

FIG 1
FIG 1
A lepA deficiency increases bacterial survival following exposure to lethal stress. Exponentially growing cultures of E. coli were treated with ampicillin (A), oxolinic acid (B), or kanamycin (C) at the concentrations indicated for 120, 120, and 30 min, respectively. Cultures were also treated with a fixed concentration of ampicillin at 32 times the MIC (D), oxolinic acid at 32 times the MIC (E), or kanamycin at 4 times the MIC (F) for the times indicated. Symbols: empty circles, wild-type strain 3001; filled circles, ΔlepA mutant strain 3499 (for kanamycin exposure only, strain 3500 for other stressors). Percent survival was measured as described in Materials and Methods. Error bars represent standard errors of the means (some error bars are covered by symbols).
FIG 2
FIG 2
A lepA deficiency exhibits little protective effect against environmental stress. Exponentially growing cultures of E. coli were incubated for 10 min at the temperatures indicated (A), incubated for 10 min with hydrogen peroxide at the concentrations indicated (B), incubated for the times indicated in medium at pH 3 (C), or exposed for 30 s to UV irradiation at the intensities indicated (D). After incubation, percent survival was determined as described in Materials and Methods. Symbols: wild type (strain 3001), empty circles; ΔlepA mutant (strain 3500), filled circles. Error bars represent standard errors of the means.
FIG 3
FIG 3
ROS are involved in lepA deficiency-mediated protection from lethal stress. Exponentially growing cultures of E. coli were treated for the times indicated with ampicillin at 32 times the MIC under anaerobic conditions (panel A), ampicillin (Amp) at 32 times the MIC following a 5-min pretreatment with or without 0.5 times the MIC of 2,2′-bipyridyl plus thiourea (BT) (panel B), ciprofloxacin at 5 times the MIC following a 5-min pretreatment with or without 0.5 times the MIC of 2,2′-bipyridyl plus thiourea (panel C). After incubation, survival was determined as described in Materials and Methods. Symbols: wild type (strain 3001), empty circles; ΔlepA mutant (strain 3500), filled circles; wild type pretreated with 0.5 times the MIC of 2,2′-bipyridyl plus thiourea for ampicillin or for ciprofloxacin (Cipro), empty squares; ΔlepA mutant pretreated with 0.5 times the MIC of 2,2′-bipyridyl plus thiourea for ampicillin or for ciprofloxacin, filled squares. Error bars represent standard errors of the means. (Panel D) Exponentially growing cultures of E. coli were treated with 10 µM H2DCFDA for 20 min before ampicillin (5 times the MIC) was added. Samples were then taken every 30 min for analysis by flow cytometry. A representative 30-min ampicillin treatment data set is shown (see Fig. S3 in the supplemental material for other time point data sets). Lines: wild type, black; ΔlepA mutant, red. Three replicate experiments gave similar results.
FIG 4
FIG 4
MazF and ChpB toxin deficiencies have different effects on ΔlepA-mediated protection from lethal stress. Exponentially growing cultures of E. coli were treated with ampicillin at 32 times the MIC for the times indicated. Percent survival was measured as described in Materials and Methods. (A) Effect of mazF deficiency. Symbols: wild type (strain 3001), empty circles; ΔlepA mutant (strain 3500), filled circles; ΔmazF mutant (strain 3496), empty squares; ΔmazF ΔlepA double mutant (strain 3497), filled squares. (B) Effect of chpB deficiency. Symbols: wild type, empty circles; ΔlepA mutant, filled circles; ΔchpB mutant (strain 2989), empty triangles; ΔchpB ΔlepA double mutant (strain 3688), filled triangles. Error bars represent standard errors of the means.
FIG 5
FIG 5
Functional tmRNA and ClpP are required for lepA deficiency-mediated protection from lethal stress. Exponentially growing cultures of E. coli were treated with ampicillin (32 times the MIC) for the times indicated. After incubation, percent survival was determined as described in Materials and Methods. (A) Effect of ssrA deficiency. Symbols: wild type (strain 3001), empty circles; ΔlepA mutant (strain 3500), filled circles; ΔssrA mutant (strain 3502), empty squares; ΔssrA ΔlepA double mutant (strain 3503), filled squares. (B) Effect of clpP deficiency. Symbols: wild type (strain 3001), empty circles; ΔlepA mutant (strain 3500), filled circles; ΔclpP mutant (strain 3226), empty squares; ΔclpP ΔlepA double mutant (strain 4114), filled squares. Error bars represent standard errors of the means.

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