RNAcentral: an international database of ncRNA sequences
- PMID: 25352543
- PMCID: PMC4384043
- DOI: 10.1093/nar/gku991
RNAcentral: an international database of ncRNA sequences
Abstract
The field of non-coding RNA biology has been hampered by the lack of availability of a comprehensive, up-to-date collection of accessioned RNA sequences. Here we present the first release of RNAcentral, a database that collates and integrates information from an international consortium of established RNA sequence databases. The initial release contains over 8.1 million sequences, including representatives of all major functional classes. A web portal (http://rnacentral.org) provides free access to data, search functionality, cross-references, source code and an integrated genome browser for selected species.
© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.
Figures
Similar articles
-
RNAcentral: a comprehensive database of non-coding RNA sequences.Nucleic Acids Res. 2017 Jan 4;45(D1):D128-D134. doi: 10.1093/nar/gkw1008. Epub 2016 Oct 28. Nucleic Acids Res. 2017. PMID: 27794554 Free PMC article.
-
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.Nucleic Acids Res. 2021 Jan 8;49(D1):D212-D220. doi: 10.1093/nar/gkaa921. Nucleic Acids Res. 2021. PMID: 33106848 Free PMC article.
-
Exploring Non-Coding RNAs in RNAcentral.Curr Protoc Bioinformatics. 2020 Sep;71(1):e104. doi: 10.1002/cpbi.104. Curr Protoc Bioinformatics. 2020. PMID: 32846052
-
Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases.RNA Biol. 2012 Mar;9(3):274-82. doi: 10.4161/rna.19352. Epub 2012 Mar 1. RNA Biol. 2012. PMID: 22336709 Review.
-
Computational RNomics: structure identification and functional prediction of non-coding RNAs in silico.Sci China Life Sci. 2010 May;53(5):548-62. doi: 10.1007/s11427-010-0101-9. Epub 2010 May 23. Sci China Life Sci. 2010. PMID: 20596938 Review.
Cited by
-
18S rDNA sequence-structure phylogeny of the eukaryotes simultaneously inferred from sequences and their individual secondary structures.BMC Res Notes. 2024 May 1;17(1):124. doi: 10.1186/s13104-024-06786-9. BMC Res Notes. 2024. PMID: 38693573 Free PMC article.
-
Chemical Annealing Restructures RNA for Nanopore Detection.J Am Chem Soc. 2024 May 15;146(19):12919-12924. doi: 10.1021/jacs.4c03753. Epub 2024 May 1. J Am Chem Soc. 2024. PMID: 38691627 Free PMC article.
-
Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis.Access Microbiol. 2024 Feb 20;6(2):000592.v3. doi: 10.1099/acmi.0.000592.v3. eCollection 2024. Access Microbiol. 2024. PMID: 38482369 Free PMC article.
-
De novo prediction of RNA 3D structures with deep generative models.PLoS One. 2024 Feb 15;19(2):e0297105. doi: 10.1371/journal.pone.0297105. eCollection 2024. PLoS One. 2024. PMID: 38358972 Free PMC article.
-
Predicting 3D structures and stabilities for complex RNA pseudoknots in ion solutions.Biophys J. 2023 Apr 18;122(8):1503-1516. doi: 10.1016/j.bpj.2023.03.017. Epub 2023 Mar 15. Biophys J. 2023. PMID: 36924021 Free PMC article.
References
-
- Castaneda J., Genzor P., Bortvin A. piRNAs, transposon silencing, and germline genome integrity. Mutat. Res. 2011;714:95–104. - PubMed
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources