Hereditary hearing loss: a 96 gene targeted sequencing protocol reveals novel alleles in a series of Italian and Qatari patients
- PMID: 24657061
- DOI: 10.1016/j.gene.2014.03.033
Hereditary hearing loss: a 96 gene targeted sequencing protocol reveals novel alleles in a series of Italian and Qatari patients
Abstract
Deafness is a really common disorder in humans. It can begin at any age with any degree of severity. Hereditary hearing loss is characterized by a vast genetic heterogeneity with more than 140 loci described in humans but only 65 genes so far identified. Families affected by hearing impairment would have real advantages from an early molecular diagnosis that is of primary relevance in genetic counseling. In this perspective, here we report a family-based approach employing Ion Torrent DNA sequencing technology to analyze coding and UTR regions of 96 genes related to hearing function and loss in a first series of 12 families coming from Italy and Qatar. Using this approach we were able to find the causative gene in 4 out of these 12 families (33%). In particular 5 novel alleles were identified in the following genes LOXHD1, TMPRSS3, TECTA and MYO15A already associated with hearing impairment. Our study confirms the usefulness of a targeted sequencing approach despite larger numbers are required for further validation and for defining a molecular epidemiology picture of hearing loss in these two countries.
Keywords: Deafness; Hearing loss; Targeted sequencing.
Copyright © 2014 Elsevier B.V. All rights reserved.
Similar articles
-
Targeted genomic capture and massively parallel sequencing to identify genes for hereditary hearing loss in Middle Eastern families.Genome Biol. 2011 Sep 14;12(9):R89. doi: 10.1186/gb-2011-12-9-r89. Genome Biol. 2011. PMID: 21917145 Free PMC article.
-
Targeted sequencing identifies novel variants involved in autosomal recessive hereditary hearing loss in Qatari families.Mutat Res. 2017 Aug;800-802:29-36. doi: 10.1016/j.mrfmmm.2017.05.001. Epub 2017 May 4. Mutat Res. 2017. PMID: 28501645
-
Identification of a novel homozygous mutation, TMPRSS3: c.535G>A, in a Tibetan family with autosomal recessive non-syndromic hearing loss.PLoS One. 2014 Dec 4;9(12):e114136. doi: 10.1371/journal.pone.0114136. eCollection 2014. PLoS One. 2014. PMID: 25474651 Free PMC article.
-
Hereditary hearing loss; about the known and the unknown.Hear Res. 2019 May;376:58-68. doi: 10.1016/j.heares.2019.01.003. Epub 2019 Jan 10. Hear Res. 2019. PMID: 30665849 Review.
-
Research progress in pathogenic genes of hereditary non-syndromic mid-frequency deafness.Front Med. 2016 Jun;10(2):137-42. doi: 10.1007/s11684-016-0449-8. Epub 2016 May 3. Front Med. 2016. PMID: 27142990 Review.
Cited by
-
Loxhd1 Mutations Cause Mechanotransduction Defects in Cochlear Hair Cells.J Neurosci. 2021 Apr 14;41(15):3331-3343. doi: 10.1523/JNEUROSCI.0975-20.2021. Epub 2021 Mar 11. J Neurosci. 2021. PMID: 33707295 Free PMC article.
-
Next-generation sequencing identified SPATC1L as a possible candidate gene for both early-onset and age-related hearing loss.Eur J Hum Genet. 2019 Jan;27(1):70-79. doi: 10.1038/s41431-018-0229-9. Epub 2018 Sep 3. Eur J Hum Genet. 2019. PMID: 30177775 Free PMC article.
-
Comprehensive genetic testing of Chinese SNHL patients and variants interpretation using ACMG guidelines and ethnically matched normal controls.Eur J Hum Genet. 2020 Feb;28(2):231-243. doi: 10.1038/s41431-019-0510-6. Epub 2019 Sep 20. Eur J Hum Genet. 2020. PMID: 31541171 Free PMC article.
-
Genetic etiology of hereditary hearing loss in the Gulf Cooperation Council countries.Hum Genet. 2022 Apr;141(3-4):595-605. doi: 10.1007/s00439-021-02323-x. Epub 2021 Aug 2. Hum Genet. 2022. PMID: 34338889 Review.
-
Targeted next-generation sequencing in Uyghur families with non-syndromic sensorineural hearing loss.PLoS One. 2015 May 26;10(5):e0127879. doi: 10.1371/journal.pone.0127879. eCollection 2015. PLoS One. 2015. PMID: 26011067 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources