CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II
- PMID: 22745433
- DOI: 10.1126/science.1219651
CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II
Abstract
In different phases of the transcription cycle, RNA polymerase (Pol) II recruits various factors via its C-terminal domain (CTD), which consists of conserved heptapeptide repeats with the sequence Tyr(1)-Ser(2)-Pro(3)-Thr(4)-Ser(5)-Pro(6)-Ser(7). We show that the CTD of transcribing yeast Pol II is phosphorylated at Tyr(1), in addition to Ser(2), Thr(4), Ser(5), and Ser(7). Tyr(1) phosphorylation stimulates binding of elongation factor Spt6 and impairs recruitment of termination factors Nrd1, Pcf11, and Rtt103. Tyr(1) phosphorylation levels rise downstream of the transcription start site and decrease before the polyadenylation site, largely excluding termination factors from gene bodies. These results show that CTD modifications trigger and block factor recruitment and lead to an extended CTD code that explains transcription cycle coordination on the basis of differential phosphorylation of Tyr(1), Ser(2), and Ser(5).
Similar articles
-
Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors.Nature. 2004 Jul 8;430(6996):223-6. doi: 10.1038/nature02679. Nature. 2004. PMID: 15241417
-
Uniform transitions of the general RNA polymerase II transcription complex.Nat Struct Mol Biol. 2010 Oct;17(10):1272-8. doi: 10.1038/nsmb.1903. Epub 2010 Sep 5. Nat Struct Mol Biol. 2010. PMID: 20818391
-
Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner.Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3944-E3953. doi: 10.1073/pnas.1700128114. Epub 2017 May 2. Proc Natl Acad Sci U S A. 2017. PMID: 28465432 Free PMC article.
-
The RNA polymerase II CTD "orphan" residues: Emerging insights into the functions of Tyr-1, Thr-4, and Ser-7.Transcription. 2018;9(1):30-40. doi: 10.1080/21541264.2017.1338176. Epub 2017 Oct 4. Transcription. 2018. PMID: 28771071 Free PMC article. Review.
-
A structural perspective of CTD function.Genes Dev. 2005 Jun 15;19(12):1401-15. doi: 10.1101/gad.1318105. Genes Dev. 2005. PMID: 15964991 Review.
Cited by
-
Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast.Biochim Biophys Acta. 2013 Jan;1829(1):174-85. doi: 10.1016/j.bbagrm.2012.10.003. Epub 2012 Oct 17. Biochim Biophys Acta. 2013. PMID: 23085255 Free PMC article. Review.
-
Cell Cycle-Dependent Transcription: The Cyclin Dependent Kinase Cdk1 Is a Direct Regulator of Basal Transcription Machineries.Int J Mol Sci. 2022 Jan 24;23(3):1293. doi: 10.3390/ijms23031293. Int J Mol Sci. 2022. PMID: 35163213 Free PMC article. Review.
-
The Phantom Mark: Enigmatic roles of phospho-Threonine 4 modification of the C-terminal domain of RNA polymerase II.Wiley Interdiscip Rev RNA. 2023 Jul-Aug;14(4):e1771. doi: 10.1002/wrna.1771. Epub 2023 Jan 6. Wiley Interdiscip Rev RNA. 2023. PMID: 36606410 Free PMC article.
-
A feed forward circuit comprising Spt6, Ctk1 and PAF regulates Pol II CTD phosphorylation and transcription elongation.Nucleic Acids Res. 2014 Jan;42(2):870-81. doi: 10.1093/nar/gkt1003. Epub 2013 Oct 25. Nucleic Acids Res. 2014. PMID: 24163256 Free PMC article.
-
The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome.J Biol Chem. 2013 Dec 20;288(51):36676-90. doi: 10.1074/jbc.M113.508267. Epub 2013 Nov 6. J Biol Chem. 2013. PMID: 24196955 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases