WHAT IF: a molecular modeling and drug design program
- PMID: 2268628
- DOI: 10.1016/0263-7855(90)80070-v
WHAT IF: a molecular modeling and drug design program
Abstract
A FORTRAN 77 computer program has been written to aid with macromolecular modeling and drug design. Called WHAT IF, it provides an intelligent and flexible environment for displaying, manipulating, and analyzing small molecules, proteins, nucleic acids, and their interactions. A relational protein structure database is incorporated to be queried. The program is suitable for most common crystallographic work. The menu-driven operation of WHAT IF, combined with the use of default values wherever user input is required, makes it very easy to use for a novice user while keeping full flexibility for more sophisticated studies. Although there are not too many unique features in WHAT IF, the fact that everything is integrated in one program makes it a unique tool for many purposes.
Similar articles
-
MOL3D--a modular and interactive program for molecular modeling and conformational analysis: II. Extended modules.J Mol Graph. 1992 Dec;10(4):241-6. doi: 10.1016/0263-7855(92)80076-p. J Mol Graph. 1992. PMID: 1476998
-
HAMOG: molecular graphics program for chemistry, biochemistry, molecular biology and enzyme research.J Mol Graph. 1991 Jun;9(2):122-6, 103. doi: 10.1016/0263-7855(91)85010-v. J Mol Graph. 1991. PMID: 1768642
-
Active-site-directed 3D database searching: pharmacophore extraction and validation of hits.J Comput Aided Mol Des. 1996 Oct;10(5):397-416. doi: 10.1007/BF00124472. J Comput Aided Mol Des. 1996. PMID: 8951650
-
MULTI: a shared memory approach to cooperative molecular modeling.J Mol Graph. 1991 Mar;9(1):18-23, 35. doi: 10.1016/0263-7855(91)80028-x. J Mol Graph. 1991. PMID: 2018752 Review.
-
Methods of computer-aided drug design and their applications to steroids.Curr Probl Dermatol. 1993;21:29-44. doi: 10.1159/000422361. Curr Probl Dermatol. 1993. PMID: 8299375 Review. No abstract available.
Cited by
-
Identification of a novel inactivating mutation in Isocitrate Dehydrogenase 1 (IDH1-R314C) in a high grade astrocytoma.Sci Rep. 2016 Jul 27;6:30486. doi: 10.1038/srep30486. Sci Rep. 2016. PMID: 27460417 Free PMC article.
-
Porphyromonas gingivalis virulence factor gingipain RgpB shows a unique zymogenic mechanism for cysteine peptidases.J Biol Chem. 2013 May 17;288(20):14287-14296. doi: 10.1074/jbc.M112.444927. Epub 2013 Apr 4. J Biol Chem. 2013. PMID: 23558682 Free PMC article.
-
Membrane topology and intracellular processing of cyclin M2 (CNNM2).J Biol Chem. 2012 Apr 20;287(17):13644-55. doi: 10.1074/jbc.M112.342204. Epub 2012 Mar 7. J Biol Chem. 2012. PMID: 22399287 Free PMC article.
-
Interaction pattern of Arg 62 in the A-pocket of differentially disease-associated HLA-B27 subtypes suggests distinct TCR binding modes.PLoS One. 2012;7(3):e32865. doi: 10.1371/journal.pone.0032865. Epub 2012 Mar 5. PLoS One. 2012. PMID: 22403718 Free PMC article.
-
Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.BMC Evol Biol. 2015 Jun 10;15:107. doi: 10.1186/s12862-015-0378-1. BMC Evol Biol. 2015. PMID: 26058375 Free PMC article.
MeSH terms
LinkOut - more resources
Other Literature Sources
Miscellaneous