On the analysis of the illumina 450k array data: probes ambiguously mapped to the human genome

doi:10.3389/fgene.2012.00073

. 2012 May 4:3:73.

doi: 10.3389/fgene.2012.00073. eCollection 2012.

On the analysis of the illumina 450k array data: probes ambiguously mapped to the human genome

Xu Zhang¹, Wenbo Mu, Wei Zhang

Affiliations

PMID: 22586432
PMCID: PMC3343275
DOI: 10.3389/fgene.2012.00073

On the analysis of the illumina 450k array data: probes ambiguously mapped to the human genome

Xu Zhang et al. Front Genet. 2012.

. 2012 May 4:3:73.

doi: 10.3389/fgene.2012.00073. eCollection 2012.

Authors

Xu Zhang¹, Wenbo Mu, Wei Zhang

Affiliation

¹ Department of Ecology and Evolution, University of Chicago Chicago, IL, USA.

PMID: 22586432
PMCID: PMC3343275
DOI: 10.3389/fgene.2012.00073

No abstract available

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A commentary on The impact of recent alcohol use on genome wide DNA methylation signatures by Philibert, R. A., Plume, J. M., Gibbons, F. X., Brody, G. H., and Beach, S. R. (2012). Front. Genet. 3:54. doi: 10.3389/fgene.2012.00054

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References

1. Bell J. T., Pai A. A., Pickrell J. K., Gaffney D. J., Pique-Regi R., Degner J. F., Gilad Y., Pritchard J. K. (2011). DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 12, R10.10.1186/gb-2011-12-6-405 - DOI - PMC - PubMed
1. Fraser H. B., Lam L. L., Neumann S. M., Kobor M. S. (2012). Population-specificity of human DNA methylation. Genome Biol. 13, R8.10.1186/gb-2012-13-2-r8 - DOI - PMC - PubMed
1. Kent W. J. (2002). BLAT – the BLAST-like alignment tool. Genome Res. 12, 656–66410.1101/gr.229102 - DOI - PMC - PubMed
1. Laird P. W. (2010). Principles and challenges of genomewide DNA methylation analysis. Nat. Rev. Genet. 11, 191–20310.1038/ni0310-191 - DOI - PubMed
1. Langmead B., Salzberg S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–35910.1038/nmeth.1923 - DOI - PMC - PubMed

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[1] Bell J. T., Pai A. A., Pickrell J. K., Gaffney D. J., Pique-Regi R., Degner J. F., Gilad Y., Pritchard J. K. (2011). DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 12, R10.10.1186/gb-2011-12-6-405 - DOI - PMC - PubMed

[2] Bell J. T., Pai A. A., Pickrell J. K., Gaffney D. J., Pique-Regi R., Degner J. F., Gilad Y., Pritchard J. K. (2011). DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 12, R10.10.1186/gb-2011-12-6-405 - DOI - PMC - PubMed

[3] Fraser H. B., Lam L. L., Neumann S. M., Kobor M. S. (2012). Population-specificity of human DNA methylation. Genome Biol. 13, R8.10.1186/gb-2012-13-2-r8 - DOI - PMC - PubMed

[4] Fraser H. B., Lam L. L., Neumann S. M., Kobor M. S. (2012). Population-specificity of human DNA methylation. Genome Biol. 13, R8.10.1186/gb-2012-13-2-r8 - DOI - PMC - PubMed

[5] Kent W. J. (2002). BLAT – the BLAST-like alignment tool. Genome Res. 12, 656–66410.1101/gr.229102 - DOI - PMC - PubMed

[6] Kent W. J. (2002). BLAT – the BLAST-like alignment tool. Genome Res. 12, 656–66410.1101/gr.229102 - DOI - PMC - PubMed

[7] Laird P. W. (2010). Principles and challenges of genomewide DNA methylation analysis. Nat. Rev. Genet. 11, 191–20310.1038/ni0310-191 - DOI - PubMed

[8] Laird P. W. (2010). Principles and challenges of genomewide DNA methylation analysis. Nat. Rev. Genet. 11, 191–20310.1038/ni0310-191 - DOI - PubMed

[9] Langmead B., Salzberg S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–35910.1038/nmeth.1923 - DOI - PMC - PubMed

[10] Langmead B., Salzberg S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–35910.1038/nmeth.1923 - DOI - PMC - PubMed

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On the analysis of the illumina 450k array data: probes ambiguously mapped to the human genome

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On the analysis of the illumina 450k array data: probes ambiguously mapped to the human genome

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