Taking the measure of the methylome

doi:10.1038/nbt1010-1026

Comment

. 2010 Oct;28(10):1026-8.

doi: 10.1038/nbt1010-1026.

Taking the measure of the methylome

Stephan Beck¹

Affiliations

PMID: 20944589
DOI: 10.1038/nbt1010-1026

Comment

Taking the measure of the methylome

Stephan Beck. Nat Biotechnol. 2010 Oct.

. 2010 Oct;28(10):1026-8.

doi: 10.1038/nbt1010-1026.

Author

Stephan Beck¹

Affiliation

¹ UCL Cancer Institute, University College London, London, UK. s.beck@ucl.ac.uk

PMID: 20944589
DOI: 10.1038/nbt1010-1026

Abstract

Two comparative studies from the International Human Epigenome Project find high concordance between different methods for measuring genomic methylation.

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Quantitative comparison of genome-wide DNA methylation mapping technologies.
Bock C, Tomazou EM, Brinkman AB, Müller F, Simmer F, Gu H, Jäger N, Gnirke A, Stunnenberg HG, Meissner A. Bock C, et al. Nat Biotechnol. 2010 Oct;28(10):1106-14. doi: 10.1038/nbt.1681. Epub 2010 Sep 19. Nat Biotechnol. 2010. PMID: 20852634 Free PMC article.
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF. Harris RA, et al. Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19. Nat Biotechnol. 2010. PMID: 20852635 Free PMC article.

Cited by

An integrative multi-scale analysis of the dynamic DNA methylation landscape in aging.
Yuan T, Jiao Y, de Jong S, Ophoff RA, Beck S, Teschendorff AE. Yuan T, et al. PLoS Genet. 2015 Feb 18;11(2):e1004996. doi: 10.1371/journal.pgen.1004996. eCollection 2015 Feb. PLoS Genet. 2015. PMID: 25692570 Free PMC article.
Saturation analysis for whole-genome bisulfite sequencing data.
Libertini E, Heath SC, Hamoudi RA, Gut M, Ziller MJ, Herrero J, Czyz A, Ruotti V, Stunnenberg HG, Frontini M, Ouwehand WH, Meissner A, Gut IG, Beck S. Libertini E, et al. Nat Biotechnol. 2016 Jul;34(7):691-693. doi: 10.1038/nbt.3524. Epub 2016 Jun 27. Nat Biotechnol. 2016. PMID: 27347755 No abstract available.
DNA methylation methods: Global DNA methylation and methylomic analyses.
Li S, Tollefsbol TO. Li S, et al. Methods. 2021 Mar;187:28-43. doi: 10.1016/j.ymeth.2020.10.002. Epub 2020 Oct 9. Methods. 2021. PMID: 33039572 Free PMC article. Review.
Genome-wide screen for differential DNA methylation associated with neural cell differentiation in mouse.
Cortese R, Lewin J, Bäckdahl L, Krispin M, Wasserkort R, Eckhardt F, Beck S. Cortese R, et al. PLoS One. 2011;6(10):e26002. doi: 10.1371/journal.pone.0026002. Epub 2011 Oct 18. PLoS One. 2011. PMID: 22028803 Free PMC article.
DNA methylome profiling at single-base resolution through bisulfite sequencing of 5mC-immunoprecipitated DNA.
Jia Z, Shi Y, Zhang L, Ren Y, Wang T, Xing L, Zhang B, Gao G, Bu R. Jia Z, et al. BMC Biotechnol. 2018 Feb 6;18(1):7. doi: 10.1186/s12896-017-0409-7. BMC Biotechnol. 2018. Retraction in: BMC Biotechnol. 2020 May 11;20(1):23. doi: 10.1186/s12896-020-00619-w PMID: 29409498 Free PMC article. Retracted.

See all "Cited by" articles

References

1. Epigenomics. 2010 Aug;2(4):587-98 - PubMed
1. Cancer Res. 2005 Dec 15;65(24):11241-6 - PubMed
1. Nat Biotechnol. 2010 Oct;28(10):1039-44 - PubMed
1. Nat Biotechnol. 2010 Oct;28(10):1097-105 - PubMed
1. Nature. 2009 Nov 19;462(7271):315-22 - PubMed

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[1] Epigenomics. 2010 Aug;2(4):587-98 - PubMed

[2] Epigenomics. 2010 Aug;2(4):587-98 - PubMed

[3] Cancer Res. 2005 Dec 15;65(24):11241-6 - PubMed

[4] Cancer Res. 2005 Dec 15;65(24):11241-6 - PubMed

[5] Nat Biotechnol. 2010 Oct;28(10):1039-44 - PubMed

[6] Nat Biotechnol. 2010 Oct;28(10):1039-44 - PubMed

[7] Nat Biotechnol. 2010 Oct;28(10):1097-105 - PubMed

[8] Nat Biotechnol. 2010 Oct;28(10):1097-105 - PubMed

[9] Nature. 2009 Nov 19;462(7271):315-22 - PubMed

[10] Nature. 2009 Nov 19;462(7271):315-22 - PubMed

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Taking the measure of the methylome

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Taking the measure of the methylome

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