The periplasmic domain of TolR from Haemophilus influenzae forms a dimer with a large hydrophobic groove: NMR solution structure and comparison to SAXS data
- PMID: 18269247
- DOI: 10.1021/bi702283x
The periplasmic domain of TolR from Haemophilus influenzae forms a dimer with a large hydrophobic groove: NMR solution structure and comparison to SAXS data
Abstract
TolR is a part of the Pal/Tol system which forms a five-member, membrane-spanning, multiprotein complex that is conserved in Gram-negative bacteria. The Pal/Tol system helps to maintain the integrity of the outer membrane and has been proposed to be involved in several other cellular processes including cell division. Obtaining the structure of TolR is of interest not only to help explain the many proposed functions of the Pal/Tol system but also to gain an understanding of the TolR homologues ExbD and MotB and to provide more targets for antibacterial treatments. In addition, the structure may provide insights into how colicins and bacteriophages are able to enter the cell. Here we report the solution structure of the homodimeric periplasmic domain of TolR from Haemophilus influenzae, determined with conventional, NOE-based NMR spectroscopy, supplemented by extensive residual dipolar coupling measurements. A novel method for assembling the dimer from small-angle X-ray scattering data confirms the NMR-derived structure. To facilitate NMR spectral analysis, a TolR construct containing residues 59-130 of the 139-residue protein was created. The periplasmic domain of TolR forms a C 2-symmetric dimer consisting of a strongly curved eight-stranded beta-sheet, generating a large deep groove on one side, while four helices cover the other face of the sheet. The structure of the TolR dimer together with data from the literature suggests how the periplasmic domain of TolR is most likely oriented relative to the cytoplasmic membrane and how it may interact with other components of the Pal/Tol system, particularly TolQ.
Similar articles
-
Structure and function of the Escherichia coli Tol-Pal stator protein TolR.J Biol Chem. 2015 Oct 30;290(44):26675-87. doi: 10.1074/jbc.M115.671586. Epub 2015 Sep 9. J Biol Chem. 2015. PMID: 26354441 Free PMC article.
-
The TolQ-TolR proteins energize TolA and share homologies with the flagellar motor proteins MotA-MotB.Mol Microbiol. 2001 Nov;42(3):795-807. doi: 10.1046/j.1365-2958.2001.02673.x. Mol Microbiol. 2001. PMID: 11722743
-
Role of TolR N-terminal, central, and C-terminal domains in dimerization and interaction with TolA and tolQ.J Bacteriol. 1999 Aug;181(15):4476-84. doi: 10.1128/JB.181.15.4476-4484.1999. J Bacteriol. 1999. PMID: 10419942 Free PMC article.
-
Peptidoglycan-associated lipoprotein (Pal) of Gram-negative bacteria: function, structure, role in pathogenesis and potential application in immunoprophylaxis.FEMS Microbiol Lett. 2009 Sep;298(1):1-11. doi: 10.1111/j.1574-6968.2009.01659.x. Epub 2009 May 21. FEMS Microbiol Lett. 2009. PMID: 19519769 Review.
-
The Tol proteins of Escherichia coli and their involvement in the uptake of biomolecules and outer membrane stability.FEMS Microbiol Lett. 1999 Aug 15;177(2):191-7. doi: 10.1111/j.1574-6968.1999.tb13731.x. FEMS Microbiol Lett. 1999. PMID: 10474183 Review.
Cited by
-
Rapid global structure determination of large RNA and RNA complexes using NMR and small-angle X-ray scattering.Methods. 2010 Oct;52(2):180-91. doi: 10.1016/j.ymeth.2010.06.009. Epub 2010 Jun 8. Methods. 2010. PMID: 20554045 Free PMC article. Review.
-
Hybrid Methods in Iron-Sulfur Cluster Biogenesis.Front Mol Biosci. 2017 Mar 13;4:12. doi: 10.3389/fmolb.2017.00012. eCollection 2017. Front Mol Biosci. 2017. PMID: 28349052 Free PMC article. Review.
-
Mapping the interactions between Escherichia coli TolQ transmembrane segments.J Biol Chem. 2011 Apr 1;286(13):11756-64. doi: 10.1074/jbc.M110.192773. Epub 2011 Feb 1. J Biol Chem. 2011. PMID: 21285349 Free PMC article.
-
The same periplasmic ExbD residues mediate in vivo interactions between ExbD homodimers and ExbD-TonB heterodimers.J Bacteriol. 2011 Dec;193(24):6852-63. doi: 10.1128/JB.06190-11. Epub 2011 Oct 7. J Bacteriol. 2011. PMID: 21984795 Free PMC article.
-
Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings.J Am Chem Soc. 2011 Apr 27;133(16):6288-98. doi: 10.1021/ja111318m. Epub 2011 Apr 5. J Am Chem Soc. 2011. PMID: 21466200 Free PMC article.
Publication types
MeSH terms
Substances
Associated data
- Actions
- Actions
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources