The validity of predicted T-cell epitopes
- PMID: 17045685
- DOI: 10.1016/j.tibtech.2006.10.001
The validity of predicted T-cell epitopes
Abstract
High-performing MHC class I binding predictions have been available for more than a decade; however, their value in terms of actual epitope finding has only now been estimated in a large-scale investigation undertaken by the group of Sette. This work underlines the importance of bioinformatics as a resource-saving tool in the field of epitope discovery. In addition, the data can be used to benchmark the performance of other new or existing CTL epitope-prediction tools.
Similar articles
-
A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus.Nat Biotechnol. 2006 Jul;24(7):817-9. doi: 10.1038/nbt1215. Epub 2006 Jun 11. Nat Biotechnol. 2006. PMID: 16767078
-
Computational prediction and identification of HLA-A2.1-specific Ebola virus CTL epitopes.Virology. 2007 Apr 10;360(2):257-63. doi: 10.1016/j.virol.2006.09.042. Epub 2006 Nov 22. Virology. 2007. PMID: 17123567
-
Prediction of T-cell epitopes using biosupport vector machines.J Chem Inf Model. 2005 Sep-Oct;45(5):1424-8. doi: 10.1021/ci050004t. J Chem Inf Model. 2005. PMID: 16180919
-
Methods and protocols for prediction of immunogenic epitopes.Brief Bioinform. 2007 Mar;8(2):96-108. doi: 10.1093/bib/bbl038. Epub 2006 Oct 31. Brief Bioinform. 2007. PMID: 17077136 Review.
-
T-Cell epitope discovery for variola and vaccinia viruses.Rev Med Virol. 2007 Mar-Apr;17(2):93-113. doi: 10.1002/rmv.527. Rev Med Virol. 2007. PMID: 17195963 Review.
Cited by
-
Tumor neoantigens: building a framework for personalized cancer immunotherapy.J Clin Invest. 2015 Sep;125(9):3413-21. doi: 10.1172/JCI80008. Epub 2015 Aug 10. J Clin Invest. 2015. PMID: 26258412 Free PMC article. Review.
-
State of the art and challenges in sequence based T-cell epitope prediction.Immunome Res. 2010 Nov 3;6 Suppl 2(Suppl 2):S3. doi: 10.1186/1745-7580-6-S2-S3. Immunome Res. 2010. PMID: 21067545 Free PMC article.
-
In Silico Analysis of a Candidate Multi-epitope Peptide Vaccine Against Human Brucellosis.Mol Biotechnol. 2024 Apr;66(4):769-783. doi: 10.1007/s12033-023-00698-y. Epub 2023 Mar 20. Mol Biotechnol. 2024. PMID: 36940016 Free PMC article.
-
Whole-genome immunoinformatic analysis of F. tularensis: predicted CTL epitopes clustered in hotspots are prone to elicit a T-cell response.PLoS One. 2011;6(5):e20050. doi: 10.1371/journal.pone.0020050. Epub 2011 May 20. PLoS One. 2011. PMID: 21625462 Free PMC article.
-
An mRNA vaccine for pancreatic cancer designed by applying in silico immunoinformatics and reverse vaccinology approaches.PLoS One. 2024 Jul 8;19(7):e0305413. doi: 10.1371/journal.pone.0305413. eCollection 2024. PLoS One. 2024. PMID: 38976715 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Research Materials