An integrated view of protein evolution
- PMID: 16619049
- DOI: 10.1038/nrg1838
An integrated view of protein evolution
Abstract
Why do proteins evolve at different rates? Advances in systems biology and genomics have facilitated a move from studying individual proteins to characterizing global cellular factors. Systematic surveys indicate that protein evolution is not determined exclusively by selection on protein structure and function, but is also affected by the genomic position of the encoding genes, their expression patterns, their position in biological networks and possibly their robustness to mistranslation. Recent work has allowed insights into the relative importance of these factors. We discuss the status of a much-needed coherent view that integrates studies on protein evolution with biochemistry and functional and structural genomics.
Similar articles
-
Genomics. Molecular prodigality.Science. 2003 Feb 21;299(5610):1189-90. doi: 10.1126/science.1080010. Science. 2003. PMID: 12595679 No abstract available.
-
A biological cosmos of parallel universes: does protein structural plasticity facilitate evolution?Bioessays. 2007 Nov;29(11):1095-104. doi: 10.1002/bies.20661. Bioessays. 2007. PMID: 17935152 Review.
-
Why proteins evolve at different rates: the functional hypothesis versus the mistranslation-induced protein misfolding hypothesis.FEBS Lett. 2009 Apr 2;583(7):1053-9. doi: 10.1016/j.febslet.2009.02.033. Epub 2009 Feb 28. FEBS Lett. 2009. Retraction in: FEBS Lett. 2009 Sep 17;583(18):3108. doi: 10.1016/j.febslet.2009.08.024. PMID: 19254718 Retracted. Review.
-
An integrated view of the correlations between genomic and phenomic variables.J Genet Genomics. 2009 Nov;36(11):645-51. doi: 10.1016/S1673-8527(08)60156-3. J Genet Genomics. 2009. PMID: 19932460 Review.
-
Proteomics enhances evolutionary and functional analysis of reproductive proteins.Bioessays. 2010 Jan;32(1):26-36. doi: 10.1002/bies.200900127. Bioessays. 2010. PMID: 20020477 Review.
Cited by
-
Three independent determinants of protein evolutionary rate.J Mol Evol. 2013 Mar;76(3):98-111. doi: 10.1007/s00239-013-9543-6. Epub 2013 Feb 12. J Mol Evol. 2013. PMID: 23400388 Review.
-
A three-dimensional topology of complex I inferred from evolutionary correlations.BMC Struct Biol. 2012 Aug 3;12:19. doi: 10.1186/1472-6807-12-19. BMC Struct Biol. 2012. PMID: 22857522 Free PMC article.
-
The Statistical Trends of Protein Evolution: A Lesson from AlphaFold Database.Mol Biol Evol. 2022 Oct 7;39(10):msac197. doi: 10.1093/molbev/msac197. Mol Biol Evol. 2022. PMID: 36108094 Free PMC article.
-
Expression inheritance and constraints on cis- and trans-regulatory mutations underlying lotus color variation.Plant Physiol. 2023 Mar 17;191(3):1662-1683. doi: 10.1093/plphys/kiac522. Plant Physiol. 2023. PMID: 36417237 Free PMC article.
-
Splicing and the evolution of proteins in mammals.PLoS Biol. 2007 Feb;5(2):e14. doi: 10.1371/journal.pbio.0050014. PLoS Biol. 2007. PMID: 17298171 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources