Choice of data-collection parameters based on statistic modelling
- PMID: 12832757
- DOI: 10.1107/s0907444903008163
Choice of data-collection parameters based on statistic modelling
Abstract
A new method and the software program BEST for optimal planning of X-ray data collection from protein crystals using the rotation method are presented. From one or a few initial diffraction images, BEST estimates the statistical characteristics of the data set for different combinations of data-collection parameters and suggests the most optimal ones. The anisotropy in diffraction and the permitted width of oscillation without spatially overlapping reflections are taken into account. According to the option chosen, the optimal set of parameters provides a given average signal-to-noise ratio at a given resolution either in the shortest time or with the minimum total radiation dose. BEST has been successfully used at the protein crystallography beamlines at DORIS (DESY). The software proved to be extremely useful in using the available data-collection time in the most efficient way.
Similar articles
-
A quantitative approach to data-collection strategies.Acta Crystallogr D Biol Crystallogr. 2006 Jan;62(Pt 1):58-64. doi: 10.1107/S0907444905033998. Epub 2005 Dec 14. Acta Crystallogr D Biol Crystallogr. 2006. PMID: 16369094 Review.
-
Automation of the collection and processing of X-ray diffraction data -- a generic approach.Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1924-8. doi: 10.1107/s0907444902016864. Epub 2002 Oct 21. Acta Crystallogr D Biol Crystallogr. 2002. PMID: 12393923 Review.
-
Improving diffraction by humidity control: a novel device compatible with X-ray beamlines.Acta Crystallogr D Biol Crystallogr. 2009 Dec;65(Pt 12):1237-46. doi: 10.1107/S0907444909037822. Epub 2009 Nov 17. Acta Crystallogr D Biol Crystallogr. 2009. PMID: 19966409
-
Applications of X-Ray Micro-Beam for Data Collection.Methods Mol Biol. 2017;1607:219-238. doi: 10.1007/978-1-4939-7000-1_9. Methods Mol Biol. 2017. PMID: 28573575 Review.
-
Methods and software for diffuse X-ray scattering from protein crystals.Methods Mol Biol. 2009;544:269-79. doi: 10.1007/978-1-59745-483-4_17. Methods Mol Biol. 2009. PMID: 19488705
Cited by
-
Likelihood-based signal and noise analysis for docking of models into cryo-EM maps.Acta Crystallogr D Struct Biol. 2023 Apr 1;79(Pt 4):271-280. doi: 10.1107/S2059798323001596. Epub 2023 Mar 15. Acta Crystallogr D Struct Biol. 2023. PMID: 36920335 Free PMC article.
-
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. doi: 10.1107/S2059798319011471. Epub 2019 Oct 2. Acta Crystallogr D Struct Biol. 2019. PMID: 31588918 Free PMC article.
-
A new generation of crystallographic validation tools for the protein data bank.Structure. 2011 Oct 12;19(10):1395-412. doi: 10.1016/j.str.2011.08.006. Structure. 2011. PMID: 22000512 Free PMC article.
-
Experimental procedure for the characterization of radiation damage in macromolecular crystals.J Synchrotron Radiat. 2011 May;18(Pt 3):381-6. doi: 10.1107/S0909049511002251. Epub 2011 Mar 10. J Synchrotron Radiat. 2011. PMID: 21525646 Free PMC article.
-
Data collection for crystallographic structure determination.Methods Mol Biol. 2014;1140:211-37. doi: 10.1007/978-1-4939-0354-2_17. Methods Mol Biol. 2014. PMID: 24590721 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources