doi: 10.1023/a:1023813504011.
AstexViewer: a visualisation aid for structure-based drug design
Affiliations
- PMID: 12825620
- DOI: 10.1023/a:1023813504011
Item in Clipboard
AstexViewer: a visualisation aid for structure-based drug design
J Comput Aided Mol Des.
2002 Dec.
Abstract
AstexViewer is a Java molecular graphics program that can be used for visualisation in many aspects of structure-based drug design. This paper describes its functionality, implementation and examples of its use. The program can run as an Applet in a web browser allowing structures to be displayed without installing additional software. Applications of its use are described for visualisation and as part of a structure based design platform. The software is being made freely available to the community and may be downloaded from http://www.astex-technology.com/AstexViewer.
Similar articles
-
SChiSM2: creating interactive web page annotations of molecular structure models using Jmol.Bioinformatics. 2007 Feb 1;23(3):383-4. doi: 10.1093/bioinformatics/btl603. Epub 2007 Jan 3. Bioinformatics. 2007. PMID: 17204464
-
MoldaNet: a network distributed molecular graphics and modelling program that integrates secure signed applet and Java 3D technologies.J Mol Graph Model. 1998 Jun;16(3):144-9. doi: 10.1016/s1093-3263(99)00004-2. J Mol Graph Model. 1998. PMID: 10434254
-
Web-based shape modeling with HyperFun.IEEE Comput Graph Appl. 2005 Mar-Apr;25(2):60-9. doi: 10.1109/mcg.2005.49. IEEE Comput Graph Appl. 2005. PMID: 15794150 No abstract available.
-
The use of protein-ligand interaction fingerprints in docking.Curr Opin Drug Discov Devel. 2008 May;11(3):356-64. Curr Opin Drug Discov Devel. 2008. PMID: 18428089 Review.
-
Recent developments in de novo design and scaffold hopping.Curr Opin Drug Discov Devel. 2008 May;11(3):365-74. Curr Opin Drug Discov Devel. 2008. PMID: 18428090 Review.
Cited by
-
Models of protein-ligand crystal structures: trust, but verify.J Comput Aided Mol Des. 2015 Sep;29(9):817-36. doi: 10.1007/s10822-015-9833-8. Epub 2015 Feb 10. J Comput Aided Mol Des. 2015. PMID: 25665575 Free PMC article.
-
Sensitivity of molecular docking to induced fit effects in influenza virus neuraminidase.J Comput Aided Mol Des. 2002 Dec;16(12):855-69. doi: 10.1023/a:1023844626572. J Comput Aided Mol Des. 2002. PMID: 12825619
-
Protein structure databases.Mol Biotechnol. 2011 Jun;48(2):183-98. doi: 10.1007/s12033-010-9372-4. Mol Biotechnol. 2011. PMID: 21225378 Review.
-
Data deposition and annotation at the worldwide protein data bank.Mol Biotechnol. 2009 May;42(1):1-13. doi: 10.1007/s12033-008-9127-7. Epub 2008 Dec 10. Mol Biotechnol. 2009. PMID: 19082769 Review.
-
The SWISS-MODEL Repository and associated resources.Nucleic Acids Res. 2009 Jan;37(Database issue):D387-92. doi: 10.1093/nar/gkn750. Epub 2008 Oct 18. Nucleic Acids Res. 2009. PMID: 18931379 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources