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. 2003 Jul 1;31(13):3429-31.
doi: 10.1093/nar/gkg599.

Vienna RNA secondary structure server

Ivo L Hofacker  1
Affiliations

Vienna RNA secondary structure server

Ivo L Hofacker. Nucleic Acids Res. .

Abstract

The Vienna RNA secondary structure server provides a web interface to the most frequently used functions of the Vienna RNA software package for the analysis of RNA secondary structures. It currently offers prediction of secondary structure from a single sequence, prediction of the consensus secondary structure for a set of aligned sequences and the design of sequences that will fold into a predefined structure. All three services can be accessed via the Vienna RNA web server at http://rna.tbi.univie.ac.at/.

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Figures

Figure 1
Figure 1
Three representations for secondary structure and structure ensembles as produced by the RNAfold service: structure graph, mountain plot and dot plot. As can be seen clearly in the dot plot, the sequence has two almost equally good but very dissimilar foldings.
See this image and copyright information in PMC

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