Extended disordered proteins: targeting function with less scaffold
- PMID: 12575995
- DOI: 10.1016/S0968-0004(03)00003-3
Extended disordered proteins: targeting function with less scaffold
Abstract
It has been estimated that a large fraction of cellular proteins are natively disordered. Current opinion largely holds that natively disordered proteins are more 'adaptive', leading to advantages in regulation and in binding diverse ligands. Here, we argue for another, simple, physically based reason. Disordered proteins often have large intermolecular interfaces, the size of which is dictated by protein function. For proteins to be stable as monomers with extensive interfaces, protein size would need to be 2-3 times larger. This would either increase cellular crowding or enlarge the size of the cell by 15-30%, owing to the increase in the sequence length. Smaller sizes of cells, proteins, DNA and RNA conserve energy. Thus, disordered proteins provide a simple yet elegant solution to having large intermolecular interfaces, but with smaller protein, genome and cell sizes.
Similar articles
-
Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers.J Mol Biol. 2004 Aug 27;341(5):1327-41. doi: 10.1016/j.jmb.2004.07.002. J Mol Biol. 2004. PMID: 15321724
-
Natively unfolded proteins.Curr Opin Struct Biol. 2005 Feb;15(1):35-41. doi: 10.1016/j.sbi.2005.01.002. Curr Opin Struct Biol. 2005. PMID: 15718131 Review.
-
Molecular principles of the interactions of disordered proteins.J Mol Biol. 2007 Sep 14;372(2):549-61. doi: 10.1016/j.jmb.2007.07.004. Epub 2007 Jul 12. J Mol Biol. 2007. PMID: 17681540
-
Energetic basis of uncoupling folding from binding for an intrinsically disordered protein.J Am Chem Soc. 2013 Jan 30;135(4):1288-94. doi: 10.1021/ja305081b. Epub 2013 Jan 16. J Am Chem Soc. 2013. PMID: 23289531
-
Molecular crowding effects on protein stability.Ann N Y Acad Sci. 2005 Dec;1066:54-66. doi: 10.1196/annals.1363.005. Ann N Y Acad Sci. 2005. PMID: 16533918 Review.
Cited by
-
Interactions of TolB with the translocation domain of colicin E9 require an extended TolB box.J Bacteriol. 2005 Oct;187(19):6733-41. doi: 10.1128/JB.187.19.6733-6741.2005. J Bacteriol. 2005. PMID: 16166536 Free PMC article.
-
Intrinsically disordered proteins in the neurodegenerative processes: formation of tau protein paired helical filaments and their analysis.Cell Mol Neurobiol. 2006 Oct-Nov;26(7-8):1085-97. doi: 10.1007/s10571-006-9083-3. Epub 2006 Jun 16. Cell Mol Neurobiol. 2006. PMID: 16779670 Review.
-
What makes species unique? The contribution of proteins with obscure features.Genome Biol. 2006;7(7):R57. doi: 10.1186/gb-2006-7-7-r57. Genome Biol. 2006. PMID: 16859532 Free PMC article.
-
Raman Fingerprints of SARS-CoV-2 Omicron Subvariants: Molecular Roots of Virological Characteristics and Evolutionary Directions.ACS Infect Dis. 2023 Nov 10;9(11):2226-2251. doi: 10.1021/acsinfecdis.3c00312. Epub 2023 Oct 18. ACS Infect Dis. 2023. PMID: 37850869 Free PMC article.
-
Large-scale prediction of long disordered regions in proteins using random forests.BMC Bioinformatics. 2009 Jan 7;10:8. doi: 10.1186/1471-2105-10-8. BMC Bioinformatics. 2009. PMID: 19128505 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources