InBase: the Intein Database

doi:10.1093/nar/30.1.383

. 2002 Jan 1;30(1):383-4.

doi: 10.1093/nar/30.1.383.

InBase: the Intein Database

Francine B Perler¹

Affiliations

PMID: 11752343
PMCID: PMC99080
DOI: 10.1093/nar/30.1.383

InBase: the Intein Database

Francine B Perler. Nucleic Acids Res. 2002.

. 2002 Jan 1;30(1):383-4.

doi: 10.1093/nar/30.1.383.

Author

Francine B Perler¹

Affiliation

¹ New England Biolabs Inc., 32 Tozer Road, Beverly, MA 01915, USA. perler@neb.com

PMID: 11752343
PMCID: PMC99080
DOI: 10.1093/nar/30.1.383

Abstract

Inteins are self-catalytic protein splicing elements. InBase (http://www.neb.com/neb/inteins.html), the Intein Database and Registry, is a curated compilation of published and unpublished information about protein splicing. It presents general information as well as detailed data for each intein, including tabulated comparisons and a comprehensive bibliography. An intein-specific BLAST server is now available to assist in identifying new inteins.

PubMed Disclaimer

Cited by

Gene invasion in distant eukaryotic lineages: discovery of mutually exclusive genetic elements reveals marine biodiversity.
Monier A, Sudek S, Fast NM, Worden AZ. Monier A, et al. ISME J. 2013 Sep;7(9):1764-74. doi: 10.1038/ismej.2013.70. Epub 2013 May 2. ISME J. 2013. PMID: 23635865 Free PMC article.
Genome sequence of the model hyperthermophilic archaeon Thermococcus litoralis NS-C.
Gardner AF, Kumar S, Perler FB. Gardner AF, et al. J Bacteriol. 2012 May;194(9):2375-6. doi: 10.1128/JB.00123-12. J Bacteriol. 2012. PMID: 22493191 Free PMC article.
Endemic bacteriophages: a cautionary tale for evaluation of bacteriophage therapy and other interventions for infection control in animals.
Kropinski AM, Lingohr EJ, Moyles DM, Ojha S, Mazzocco A, She YM, Bach SJ, Rozema EA, Stanford K, McAllister TA, Johnson RP. Kropinski AM, et al. Virol J. 2012 Sep 17;9:207. doi: 10.1186/1743-422X-9-207. Virol J. 2012. PMID: 22985539 Free PMC article.
DING Proteins Extend to the Extremophilic World.
Porzio E, Faraone Mennella MR, Manco G. Porzio E, et al. Int J Mol Sci. 2021 Feb 18;22(4):2035. doi: 10.3390/ijms22042035. Int J Mol Sci. 2021. PMID: 33670786 Free PMC article. Review.
Engineering Factor Viii for Hemophilia Gene Therapy.
Roberts SA, Dong B, Firrman JA, Moore AR, Sang N, Xiao W. Roberts SA, et al. J Genet Syndr Gene Ther. 2011 Dec 21;1:S1-006. doi: 10.4172/2157-7412.S1-006. J Genet Syndr Gene Ther. 2011. PMID: 23565342 Free PMC article.

See all "Cited by" articles

References

1. Perler F.B., Davis,E.O., Dean,G.E., Gimble,F.S., Jack,W.E., Neff,N., Noren,C.J., Thorner,J. and Belfort,M. (1994) Protein splicing elements: inteins and exteins—a definition of terms and recommended nomenclature. Nucleic Acids Res., 22, 1125–1127. - PMC - PubMed
1. Noren C.J., Wang,J. and Perler,F.B. (2000) Dissecting the chemistry of protein splicing and its applications. Angew. Chem. Int. Ed., 39, 450–466. - PubMed
1. Paulus H. (2001) Inteins as enzymes. Bioorg. Chem., 29, 119–129. - PubMed
1. Belfort M. and Roberts,R.J. (1997) Homing endonucleases: keeping the house in order. Nucleic Acids Res., 25, 3379–3388. - PMC - PubMed
1. Gimble F.S. and Thorner,J. (1992) Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature, 357, 301–306. - PubMed

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

LinkOut - more resources

Full Text Sources
Other Literature Sources
- The Lens - Patent Citations Database
Research Materials
- NCI CPTC Antibody Characterization Program

[1] Perler F.B., Davis,E.O., Dean,G.E., Gimble,F.S., Jack,W.E., Neff,N., Noren,C.J., Thorner,J. and Belfort,M. (1994) Protein splicing elements: inteins and exteins—a definition of terms and recommended nomenclature. Nucleic Acids Res., 22, 1125–1127. - PMC - PubMed

[2] Perler F.B., Davis,E.O., Dean,G.E., Gimble,F.S., Jack,W.E., Neff,N., Noren,C.J., Thorner,J. and Belfort,M. (1994) Protein splicing elements: inteins and exteins—a definition of terms and recommended nomenclature. Nucleic Acids Res., 22, 1125–1127. - PMC - PubMed

[3] Noren C.J., Wang,J. and Perler,F.B. (2000) Dissecting the chemistry of protein splicing and its applications. Angew. Chem. Int. Ed., 39, 450–466. - PubMed

[4] Noren C.J., Wang,J. and Perler,F.B. (2000) Dissecting the chemistry of protein splicing and its applications. Angew. Chem. Int. Ed., 39, 450–466. - PubMed

[5] Paulus H. (2001) Inteins as enzymes. Bioorg. Chem., 29, 119–129. - PubMed

[6] Paulus H. (2001) Inteins as enzymes. Bioorg. Chem., 29, 119–129. - PubMed

[7] Belfort M. and Roberts,R.J. (1997) Homing endonucleases: keeping the house in order. Nucleic Acids Res., 25, 3379–3388. - PMC - PubMed

[8] Belfort M. and Roberts,R.J. (1997) Homing endonucleases: keeping the house in order. Nucleic Acids Res., 25, 3379–3388. - PMC - PubMed

[9] Gimble F.S. and Thorner,J. (1992) Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature, 357, 301–306. - PubMed

[10] Gimble F.S. and Thorner,J. (1992) Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature, 357, 301–306. - PubMed

Save citation to file

Email citation

Add to Collections

Add to My Bibliography

Your saved search

Create a file for external citation management software

Your RSS Feed

InBase: the Intein Database

Affiliation

InBase: the Intein Database

Author

Affiliation

Abstract

Similar articles

Cited by

References

MeSH terms

LinkOut - more resources

Full Text Sources

Other Literature Sources

Research Materials