Implementation of molecular replacement in AMoRe
- PMID: 11567147
- DOI: 10.1107/s0907444901012422
Implementation of molecular replacement in AMoRe
Abstract
An account is given of the molecular replacement method as implemented in the package AMoRe. The overall strategy of the method is presented and the main functions used in the package are described. The most important features of AMoRe are the quality of the fast rotation and translation functions and the facility of multiple inputs to translation and rigid-body refinement functions, which allow for a fast multiple exploration of crystal configurations with a high level of automation.
Similar articles
-
Patterson correlation methods: a review of molecular replacement with CNS.Acta Crystallogr D Biol Crystallogr. 2001 Oct;57(Pt 10):1390-6. doi: 10.1107/s090744490101246x. Epub 2001 Sep 21. Acta Crystallogr D Biol Crystallogr. 2001. PMID: 11567150 Review.
-
Calculation of spherical harmonics and Wigner d functions by FFT. Applications to fast rotational matching in molecular replacement and implementation into AMoRe.Acta Crystallogr A. 2006 Jul;62(Pt 4):262-9. doi: 10.1107/S0108767306017478. Epub 2006 Jun 21. Acta Crystallogr A. 2006. PMID: 16788266
-
Pushing the boundaries of molecular replacement with maximum likelihood.Acta Crystallogr D Biol Crystallogr. 2001 Oct;57(Pt 10):1373-82. doi: 10.1107/s0907444901012471. Epub 2001 Sep 21. Acta Crystallogr D Biol Crystallogr. 2001. PMID: 11567148
-
Using Phaser and ensembles to improve the performance of SIMBAD.Acta Crystallogr D Struct Biol. 2020 Jan 1;76(Pt 1):1-8. doi: 10.1107/S2059798319015031. Epub 2020 Jan 1. Acta Crystallogr D Struct Biol. 2020. PMID: 31909738 Free PMC article.
-
EDM-DEDM and protein crystal structure solution.Acta Crystallogr D Biol Crystallogr. 2009 May;65(Pt 5):477-84. doi: 10.1107/S0907444909008609. Epub 2009 Apr 18. Acta Crystallogr D Biol Crystallogr. 2009. PMID: 19390153 Review.
Cited by
-
Structural understanding of the glutathione-dependent reduction mechanism of glutathionyl-hydroquinone reductases.J Biol Chem. 2012 Oct 19;287(43):35838-48. doi: 10.1074/jbc.M112.395541. Epub 2012 Sep 6. J Biol Chem. 2012. PMID: 22955277 Free PMC article.
-
Structural and biochemical analyses of glycoside hydrolase families 5 and 26 β-(1,4)-mannanases from Podospora anserina reveal differences upon manno-oligosaccharide catalysis.J Biol Chem. 2013 May 17;288(20):14624-14635. doi: 10.1074/jbc.M113.459438. Epub 2013 Apr 4. J Biol Chem. 2013. PMID: 23558681 Free PMC article.
-
Purification, crystallization and preliminary X-ray diffraction analysis of the Escherichia coli common pilus chaperone EcpB.Acta Crystallogr F Struct Biol Commun. 2015 Jun;71(Pt 6):676-9. doi: 10.1107/S2053230X15006354. Epub 2015 May 20. Acta Crystallogr F Struct Biol Commun. 2015. PMID: 26057794 Free PMC article.
-
Purification, crystallization and crystallographic analysis of Dictyostelium discoideum phenylalanine hydroxylase in complex with dihydrobiopterin and FeIII.Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Apr 1;66(Pt 4):463-6. doi: 10.1107/S1744309110007220. Epub 2010 Mar 31. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010. PMID: 20383023 Free PMC article.
-
Expression, purification, crystallization and preliminary X-ray crystallographic studies of a novel acetylcitrulline deacetylase from Xanthomonas campestris.Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt 7):676-9. doi: 10.1107/S1744309105018051. Epub 2005 Jun 15. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005. PMID: 16511126 Free PMC article.
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources