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. 1999 Jun;73(6):4705-12.
doi: 10.1128/JVI.73.6.4705-4712.1999.

Phenotypic consequences of rearranging the P, M, and G genes of vesicular stomatitis virus

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Phenotypic consequences of rearranging the P, M, and G genes of vesicular stomatitis virus

L A Ball et al. J Virol. 1999 Jun.

Abstract

The nonsegmented negative-strand RNA viruses (order Mononegavirales) include many important human pathogens. The order of their genes, which is highly conserved, is the major determinant of the relative levels of gene expression, since genes that are close to the single promoter site at the 3' end of the viral genome are transcribed at higher levels than those that occupy more distal positions. We manipulated an infectious cDNA clone of the prototypic vesicular stomatitis virus (VSV) to rearrange three of the five viral genes, using an approach which left the viral nucleotide sequence otherwise unaltered. The central three genes in the gene order, which encode the phosphoprotein P, the matrix protein M, and the glycoprotein G, were rearranged into all six possible orders. Viable viruses were recovered from each of the rearranged cDNAs. The recovered viruses were examined for their levels of gene expression, growth potential in cell culture, and virulence in mice. Gene rearrangement changed the expression levels of the encoded proteins in concordance with their distance from the 3' promoter. Some of the viruses with rearranged genomes replicated as well or slightly better than wild-type virus in cultured cells, while others showed decreased replication. All of the viruses were lethal for mice, although the time to symptoms and death following inoculation varied. These data show that despite the highly conserved gene order of the Mononegavirales, gene rearrangement is not lethal or necessarily even detrimental to the virus. These findings suggest that the conservation of the gene order observed among the Mononegavirales may result from immobilization of the ancestral gene order due to the lack of a mechanism for homologous recombination in this group of viruses. As a consequence, gene rearrangement should be irreversible and provide an approach for constructing viruses with novel phenotypes.

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Figures

FIG. 1
FIG. 1
Schematic representations (not to scale) of the gene orders of wild-type VSV and the rearranged variant viruses. The wild-type (wt) virus used throughout this work was recovered from a cDNA clone that was reconstructed in parallel with the rearranged viruses by using the same individual gene clones; it was previously designated VSV N1 (PMG) to emphasize this distinction (45). The variant viruses were named according to the order of their central three genes. le, leader; tr, trailer.
FIG. 2
FIG. 2
Determination of gene order in recovered viral genomes. Genomic RNA was isolated from recovered viruses and analyzed by reverse transcription and PCR, followed by restriction enzyme analysis of the PCR products. (a) Schematic diagram of the VSV genome showing positions of PCR primers that annealed to the N or L genes, respectively (shown by the arrows) and restriction enzyme cleavage sites and predicted fragment sizes. (b) Products after digestion with indicated enzymes of the cDNAs of viral RNA from viruses GMP, MGP, PGM, PMG, GPM, and MPG are shown in lanes 1 through 6, respectively. Fragments were analyzed by electrophoresis on a 1% agarose gel in the presence of ethidium bromide. Lanes M = marker DNA fragments with sizes as indicated.
FIG. 3
FIG. 3
(a) Viral RNAs synthesized in BHK-21 cells that were infected with the wild-type and variant viruses. Viral RNAs were labeled with [3H]uridine as described in Materials and Methods, resolved by electrophoresis on an agarose-urea gel, and detected by fluorography. The infecting viruses are shown above the lanes, and the viral RNAs are identified on the left. (b) Viral proteins synthesized in BHK-21 cells that were infected with the wild-type and variant viruses. Viral proteins were labeled with [35S]methionine as described in Materials and Methods, resolved by electrophoresis on an SDS-polyacrylamide gel, and detected by autoradiography. The infecting viruses are shown above the lanes, and the viral proteins are identified on the left. Uninf, uninfected cells.
FIG. 4
FIG. 4
Molar ratios of viral proteins synthesized in BHK-21 cells that were infected with the wild-type and variant viruses. Proteins were labeled as described in Materials and Methods, resolved on SDS-polyacrylamide gels as shown in Fig. 3b, and quantitated by phosphorimaging. Molar ratios were calculated after normalizing for the methionine contents of the individual proteins: N-14, P-5, M-11, G-10, and L-60 (35).
FIG. 5
FIG. 5
Single-step growth curves of wild-type VSV and the rearranged variants in BSC-1 cells. Viral titers were measured in duplicate at each time point during three independent single-step growth experiments at 37°C, and the results were averaged.
FIG. 6
FIG. 6
Pathogenesis of wild-type (wt) and variant viruses following intranasal inoculation into mice. The time course of morbidity (gray bars) and mortality (black bars) in animals that received intranasal inoculation of 100 PFU of each of the variant viruses is shown. No further changes occurred after the time periods shown.

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