The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis
- PMID: 8413273
- PMCID: PMC364741
- DOI: 10.1128/mcb.13.11.6789-6798.1993
The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis
Abstract
eIF-4A is a eukaryotic translation initiation factor that is required for mRNA binding to ribosomes. It exhibits single-stranded RNA-dependent ATPase activity, and in combination with a second initiation factor, eIF-4B, it exhibits duplex RNA helicase activity. eIF-4A is the prototype of a large family of proteins termed the DEAD box protein family, whose members share nine highly conserved amino acid regions. The functions of several of these conserved regions in eIF-4A have previously been assigned to ATP binding, ATPase, and helicase activities. To define the RNA-binding region of eIF-4A, a UV-induced cross-linking assay was used to analyze binding of mutant eIF-4A proteins to RNA. Mutants carrying mutations in the ATP-binding region (AXXXXGKT), ATPase region (DEAD), helicase region (SAT), and the most carboxy-terminal conserved region of the DEAD family, HRIGRXXR, were tested for RNA cross-linking. We show that mutations, either conservative or not, in any one of the three arginines in the HRIGRXXR sequence drastically reduced eIF-4A cross-linking to RNA. In addition, all the mutations in the HRIGRXXR region abrogate RNA helicase activity. Some but not all of these mutations affect ATP binding and ATPase activity. This is consistent with the hypothesis that the HRIGRXXR region is involved in the ATP hydrolysis reaction and would explain the coupling of ATPase and RNA-binding/helicase activities. Our results show that the HRIGRXXR region, which is QRXGRXXR or QXXGRXXR in the RNA and DNA helicases of the helicase superfamily II, is involved in ATP hydrolysis-dependent RNA interaction during unwinding. We also show that mutations in other regions of eIF-4A that abolish ATPase activity sharply decrease eIF-4A cross-linking to RNA. A model is proposed in which eIF-4A first binds ATP, resulting in a change in eIF-4A conformation which allows RNA binding that is dependent on the HRIGRXXR region. Binding of RNA induces ATP hydrolysis, leading to a more stable interaction with RNA. This process is then linked to unwinding of duplex RNA in the presence of eIF-4B.
Similar articles
-
Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A.EMBO J. 1992 Jul;11(7):2643-54. doi: 10.1002/j.1460-2075.1992.tb05330.x. EMBO J. 1992. PMID: 1378397 Free PMC article.
-
ATP hydrolysis by initiation factor 4A is required for translation initiation in Saccharomyces cerevisiae.Proc Natl Acad Sci U S A. 1992 Aug 15;89(16):7664-8. doi: 10.1073/pnas.89.16.7664. Proc Natl Acad Sci U S A. 1992. PMID: 1502180 Free PMC article.
-
Dominant negative mutants of mammalian translation initiation factor eIF-4A define a critical role for eIF-4F in cap-dependent and cap-independent initiation of translation.EMBO J. 1994 Mar 1;13(5):1205-15. doi: 10.1002/j.1460-2075.1994.tb06370.x. EMBO J. 1994. PMID: 8131750 Free PMC article.
-
From unwinding to clamping - the DEAD box RNA helicase family.Nat Rev Mol Cell Biol. 2011 Jul 22;12(8):505-16. doi: 10.1038/nrm3154. Nat Rev Mol Cell Biol. 2011. PMID: 21779027 Review.
-
The DEAD-box helicase eIF4A: paradigm or the odd one out?RNA Biol. 2013 Jan;10(1):19-32. doi: 10.4161/rna.21966. Epub 2012 Sep 20. RNA Biol. 2013. PMID: 22995829 Free PMC article. Review.
Cited by
-
Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) is a substrate for the nucleotide hydrolysis and RNA unwinding activities of eukaryotic translation initiation factor eIF4A.RNA. 2003 Oct;9(10):1180-7. doi: 10.1261/rna.2103703. RNA. 2003. PMID: 13130132 Free PMC article.
-
Sexually dimorphic expression of vasa isoforms in the tongue sole (Cynoglossus semilaevis).PLoS One. 2014 Mar 26;9(3):e93380. doi: 10.1371/journal.pone.0093380. eCollection 2014. PLoS One. 2014. PMID: 24671276 Free PMC article.
-
Functional Cyclization of Eukaryotic mRNAs.Int J Mol Sci. 2020 Feb 29;21(5):1677. doi: 10.3390/ijms21051677. Int J Mol Sci. 2020. PMID: 32121426 Free PMC article.
-
DEAD-box proteins as RNA helicases and chaperones.Wiley Interdiscip Rev RNA. 2011 Jan-Feb;2(1):135-52. doi: 10.1002/wrna.50. Wiley Interdiscip Rev RNA. 2011. PMID: 21297876 Free PMC article. Review.
-
PRP16, a DEAH-box RNA helicase, is recruited to the spliceosome primarily via its nonconserved N-terminal domain.RNA. 1998 Oct;4(10):1216-29. RNA. 1998. PMID: 9769096 Free PMC article.
References
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Research Materials
Miscellaneous