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. 2021 May 11;87(11):e00169-21.
doi: 10.1128/AEM.00169-21. Print 2021 May 11.

Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753

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Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753

Sheng-Da Zhang et al. Appl Environ Microbiol. .

Abstract

While the effects of antibiotics on microorganisms are widely studied, it remains less well understood how antibiotics affect the physiology of the native producing organisms. Here, using a marine bacterium, Photobacterium galatheae S2753, that produces the antibiotic holomycin, we generated a holomycin-deficient strain by in-frame deletion of hlmE, the core gene responsible for holomycin production. Mass spectrometry analysis of cell extracts confirmed that the ΔhlmE strain did not produce holomycin and that the mutant was devoid of antibacterial activity. Biofilm formation of the ΔhlmE strain was significantly reduced compared to that of wild-type S2753 and was restored in an hlmE complementary mutant. Consistent with this, exogenous holomycin, but not its dimethylated and less antibacterial derivative, S,S'-dimethyl holomycin, restored the biofilm formation of the ΔhlmE strain. Furthermore, zinc starvation was found to be essential for both holomycin production and biofilm formation of S2753, although the molecular mechanism remains elusive. Collectively, these data suggest that holomycin promotes biofilm formation of S2753 via its ene-disulfide group. Lastly, the addition of holomycin at subinhibitory concentrations also enhanced the biofilms of four other Vibrionaceae strains. P. galatheae likely gains an ecological advantage from producing holomycin as both an antibiotic and a biofilm stimulator, which facilitates nutrition acquisition and protects P. galatheae from environmental stresses. Studying the function of antibiotic compounds in the native producer will shed light on their roles in nature and could point to novel bioprospecting strategies.IMPORTANCE Despite the societal impact of antibiotics, their ecological functions remain elusive and have mostly been studied by exposing nonproducing bacteria to subinhibitory concentrations. Here, we studied the effects of the antibiotic holomycin on its native producer, Photobacterium galatheae S2753, a Vibrionaceae bacterium. Holomycin provides a distinct advantage to S2753 both as an antibiotic and by enhancing biofilm formation in the producer. Vibrionaceae species successfully thrive in global marine ecosystems, where they play critical ecological roles as free-living, symbiotic, or pathogenic bacteria. Genome mining has demonstrated that many have the potential to produce several bioactive compounds, including P. galatheae To unravel the contribution of the microbial metabolites to the development of marine microbial ecosystems, better insight into the function of these compounds in the producing organisms is needed. Our finding provides a model to pursue this and highlights the ecological importance of antibiotics to the fitness of the producing organisms.

Keywords: Photobacterium galatheae; biofilm; biosynthetic gene cluster; holomycin; secondary metabolites.

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Figures

FIG 1
FIG 1
(A) Comparison of biosynthetic gene clusters of holomycin. The genes are marked with the respective numbers or letters. Genes coding for proteins with the same function are highlighted in the same color. Genes assigned to NRPS are marked with domains: PCP, peptidyl carrier protein; A, adenylation domain; Cy, cyclization domain. Sequentially homologous genes are linked with dotted lines. (B). Diagram of the wild-type hlmE gene region and a scarless in-frame deletion of hlmE gene in S2753. (Left) A schematic illustration for the primers used, their annealing sites, and predicted PCR products in S2753 wild-type (WT) and ΔhlmE strains. (Right) Diagnostic PCRs of the hlmE gene region in WT and ΔhlmE strains. (C and D) In-frame deletion of the core gene hlmE completely abolished the holomycin production of the ΔhlmE strain. Base peak and extracted ion chromatograms (m/z = 214.9943) of culture extracts are shown in gray and black, respectively. UV-visible data at 390 ± 10 nm also showed the termination of holomycin production in the deletion strain. A red asterisk indicates the peak of holomycin in the detection. (E and F) Antimicrobial activity of culture extracts against the Gram-negative bacterium Vibrio anguillarum 90-11-287 and the Gram-positive bacterium Staphylococcus aureus 8325. Crude extracts of the WT cultures and culture media (blank) were used as the positive and negative control, respectively. (G) Antimicrobial activity of culture extracts of ΔhlmE::pBBR1-MCS2-hlmEhlmE::hlmE) and ΔhlmE::pBBR1-MCS2 (ΔhlmE::NC) strains against the Gram-negative bacterium Vibrio anguillarum 90-11-287. Crude extracts of the WT and cultures and ΔhlmE strain were used as the positive and negative controls, respectively.
FIG 2
FIG 2
Boxplot of the biofilm produced by Photobacterium galatheae S2753 wild-type (WT), ΔhlmE, ΔhlmE::pBBR1-MCS2 (ΔhlmE::NC), and ΔhlmE::pBBR1-MCS2-hlmEhlmE::hlmE) strains. Underneath each bar is the crystal violet staining of the biofilm. At least eight biological replicates were performed for each strain. Error bars represent the standard deviations.
FIG 3
FIG 3
Biofilm formation of wild-type S2753 and ΔhlmE strains in the presence of exogenously applied holomycin (1) or S,S′-dimethyl holomycin (2). At least eight biological replicates were performed for each condition. Error bars represent the standard deviations. For all panels, two-way analysis of variance (ANOVA) was used for statistical analysis. ***, P < 0.001.
FIG 4
FIG 4
Holomycin production (black columns) and biofilm formation (white columns) of wild-type Photobacterium galatheae S2753 in the presence of increasing zinc in the marine minimal medium with mannose. Three and nine biological replicates were performed in detecting holomycin production and biofilm formation, respectively. Error bars represent the standard deviations.
FIG 5
FIG 5
Overview of the relative biofilm formation of selected marine bacteria by subinhibitory concentrations of holomycin. The relative biofilm formation was calculated by dividing the OD590/OD600 value of cultures without added holomycin. Error bars represent the standard deviations of three biological replicates.
FIG 6
FIG 6
Biofilm formation of four Galatheae Collection bacteria when subinhibitory concentrations of holomycin were added to the cultures at the initial inoculation time (0 h) or after 17 h of incubation at 25°C (17 h). Crystal violet staining was used to access the biofilm formation in the 2-day incubation cultures. Error bars represent the standard deviations. (A) Vibrio sp. strain S1396. (B) Vibrio sp. strain S1399. (C) Vibrio coralliilyticus S2052. (D) Photobacterium sp. strain S2541. Three biological replicates were performed. Error bars represent the standard deviations.

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