Current status of the multinational Arabidopsis community

doi:10.1002/pld3.248

. 2020 Aug 2;4(7):e00248.

doi: 10.1002/pld3.248. eCollection 2020 Jul.

Current status of the multinational Arabidopsis community

Geraint Parry¹, Nicholas J Provart², Siobhan M Brady³, Baris Uzilday⁴; Multinational Arabidopsis Steering Committee

Collaborators, Affiliations

Collaborators

Multinational Arabidopsis Steering Committee:
Keith Adams, Wagner Araújo, Sébastien Aubourg, Sacha Baginsky, Erica Bakker, Katja Bärenfaller, Jacqui Batley, Mike Beale, Mark Beilstein, Youssef Belkhadir, Gregor Mendel, Tanya Berardini, Joy Bergelson, Francisca Blanco-Herrera, Siobhan Brady, Hans-Peter Braun, Steve Briggs, Lynette Brownfield, Maura Cardarelli, Marcos Castellanos-Uribe, Gloria Coruzzi, Maheshi Dassanayake, Geert De Jaeger, Brian Dilkes, Colleen Doherty, Joe Ecker, Pat Edger, David Edwards, Farid El Kasmi, Maria Eriksson, Moises Exposito-Alonso, Pascal Falter-Braun, Alisdair Fernie, Myriam Ferro, Oliver Fiehn, Joanna Friesner, Katie Greenham, Yalong Guo, Thorsten Hamann, Angela Hancock, Marie-Theres Hauser, Joshua Heazlewood, Cheng-Hsun Ho, Hanna Hõrak, Eva Huala, Inhwan Hwang, Satoshi Iuchi, Pankaj Jaiswal, Liina Jakobson, Yunhe Jiang, Yuling Jiao, Alexandra Jones, Yasuhiro Kadota, Jitendra Khurana, Dan Kliebenstein, Emma Knee, Masatomo Kobayashi, Marcus Koch, Gabriel Krouk, Tony Larson, Rob Last, Loïc Lepiniec, Song Li, Claire Lurin, Martin Lysak, Steven Maere, Robert Malinowski, Florian Maumus, Sean May, Klaus Mayer, David Mendoza-Cozatl, Isabel Mendoza-Poudereux, José Luis Micol, Harvey Millar, Hans-Peter Mock, Karolina Mukhtar, Shahid Mukhtar, Monika Murcha, Hirofumi Nakagami, Yasukazu Nakamura, Luke Nicolov, Basil Nikolau, Moritz Nowack, Adriano Nunes-Nesi, Michael Palmgren, Geraint Parry, Nicola Patron, Scott Peck, Ullas Pedmale, Catherine Perrot-Rechenmann, Roland Pieruschka, José Pío-Beltrán, J Chris Pires, Nicholas Provart, Loïc Rajjou, Leonore Reiser, Sue Rhee, Stamatis Rigas, Norbert Rolland, Andres Romanowski, Sigal Savaldi-Goldstein, Robert Schmitz, Waltraud Schulze, Motoaki Seki, Kentaro K Shimizu, Keith Slotkin, Ian Small, David Somers, Rosangela Sozzani, Charles Spillane, Ramamurthy Srinivasan, Nicolas Taylor, Marcela-Karey Tello-Ruiz, Jay Thelen, Takayuki Tohge, Christopher Town, Tetsuro Toyoda, Baris Uzilday, Justin Walley, Doreen Ware, Wolfram Weckwerth, Julian Whitelegge, Stefanie Wienkoop, Clay Wright, Michael Wrzaczek, Misako Yamazaki, Marcelo Yanovsky, Viktor Žárský, Xuehua Zhong, Yves Van De Peer, Klaas Van Wijk, Philipp Von Gillhaussen

Affiliations

¹ School of Biosciences Cardiff University Cardiff United Kingdom.
² Department of Cell and System Biology/Centre for the Analysis of Genome Evolution and Function University of Toronto Toronto Canada.
³ Department of Plant Biology and Genome Center University of California Davis USA.
⁴ Department of Biology Faculty of Science Ege University Izmir Turkey.

PMID: 32775952
PMCID: PMC7396448
DOI: 10.1002/pld3.248

Current status of the multinational Arabidopsis community

Geraint Parry et al. Plant Direct. 2020.

. 2020 Aug 2;4(7):e00248.

doi: 10.1002/pld3.248. eCollection 2020 Jul.

Authors

Geraint Parry¹, Nicholas J Provart², Siobhan M Brady³, Baris Uzilday⁴; Multinational Arabidopsis Steering Committee

Collaborators

Multinational Arabidopsis Steering Committee:
Keith Adams, Wagner Araújo, Sébastien Aubourg, Sacha Baginsky, Erica Bakker, Katja Bärenfaller, Jacqui Batley, Mike Beale, Mark Beilstein, Youssef Belkhadir, Gregor Mendel, Tanya Berardini, Joy Bergelson, Francisca Blanco-Herrera, Siobhan Brady, Hans-Peter Braun, Steve Briggs, Lynette Brownfield, Maura Cardarelli, Marcos Castellanos-Uribe, Gloria Coruzzi, Maheshi Dassanayake, Geert De Jaeger, Brian Dilkes, Colleen Doherty, Joe Ecker, Pat Edger, David Edwards, Farid El Kasmi, Maria Eriksson, Moises Exposito-Alonso, Pascal Falter-Braun, Alisdair Fernie, Myriam Ferro, Oliver Fiehn, Joanna Friesner, Katie Greenham, Yalong Guo, Thorsten Hamann, Angela Hancock, Marie-Theres Hauser, Joshua Heazlewood, Cheng-Hsun Ho, Hanna Hõrak, Eva Huala, Inhwan Hwang, Satoshi Iuchi, Pankaj Jaiswal, Liina Jakobson, Yunhe Jiang, Yuling Jiao, Alexandra Jones, Yasuhiro Kadota, Jitendra Khurana, Dan Kliebenstein, Emma Knee, Masatomo Kobayashi, Marcus Koch, Gabriel Krouk, Tony Larson, Rob Last, Loïc Lepiniec, Song Li, Claire Lurin, Martin Lysak, Steven Maere, Robert Malinowski, Florian Maumus, Sean May, Klaus Mayer, David Mendoza-Cozatl, Isabel Mendoza-Poudereux, José Luis Micol, Harvey Millar, Hans-Peter Mock, Karolina Mukhtar, Shahid Mukhtar, Monika Murcha, Hirofumi Nakagami, Yasukazu Nakamura, Luke Nicolov, Basil Nikolau, Moritz Nowack, Adriano Nunes-Nesi, Michael Palmgren, Geraint Parry, Nicola Patron, Scott Peck, Ullas Pedmale, Catherine Perrot-Rechenmann, Roland Pieruschka, José Pío-Beltrán, J Chris Pires, Nicholas Provart, Loïc Rajjou, Leonore Reiser, Sue Rhee, Stamatis Rigas, Norbert Rolland, Andres Romanowski, Sigal Savaldi-Goldstein, Robert Schmitz, Waltraud Schulze, Motoaki Seki, Kentaro K Shimizu, Keith Slotkin, Ian Small, David Somers, Rosangela Sozzani, Charles Spillane, Ramamurthy Srinivasan, Nicolas Taylor, Marcela-Karey Tello-Ruiz, Jay Thelen, Takayuki Tohge, Christopher Town, Tetsuro Toyoda, Baris Uzilday, Justin Walley, Doreen Ware, Wolfram Weckwerth, Julian Whitelegge, Stefanie Wienkoop, Clay Wright, Michael Wrzaczek, Misako Yamazaki, Marcelo Yanovsky, Viktor Žárský, Xuehua Zhong, Yves Van De Peer, Klaas Van Wijk, Philipp Von Gillhaussen

Affiliations

¹ School of Biosciences Cardiff University Cardiff United Kingdom.
² Department of Cell and System Biology/Centre for the Analysis of Genome Evolution and Function University of Toronto Toronto Canada.
³ Department of Plant Biology and Genome Center University of California Davis USA.
⁴ Department of Biology Faculty of Science Ege University Izmir Turkey.

PMID: 32775952
PMCID: PMC7396448
DOI: 10.1002/pld3.248

Abstract

The multinational Arabidopsis research community is highly collaborative and over the past thirty years these activities have been documented by the Multinational Arabidopsis Steering Committee (MASC). Here, we (a) highlight recent research advances made with the reference plant Arabidopsis thaliana; (b) provide summaries from recent reports submitted by MASC subcommittees, projects and resources associated with MASC and from MASC country representatives; and (c) initiate a call for ideas and foci for the "fourth decadal roadmap," which will advise and coordinate the global activities of the Arabidopsis research community.

Keywords: Arabidopsis thaliana; Research Network; collaboration; roadmap.

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Figures

**FIGURE 1**
Papers published in PubMed journals globally with Arabidopsis, rice/oryza, corn/maize or wheat/triticum in the Title/Abstract. The following term was used in the PubMed search box: ARABIDOPSIS [Title/Abstract] AND ("journal article"[Publication Type] OR "review"[Publication Type]) AND 2018[DP]

**FIGURE 2**
Distribution of NASC natural ecotype collection across the world (Data provided by Marcos Castellanos‐Uribe, Operations Manager at NASC). Focus around Europe shows concentration of the collection on specific regions. Chart below shows number of NASC stock entries per 100.000 km² land area. Note that countries with less than 100.000 km² land area were omitted from the list

**FIGURE 3**
Papers published in PubMed journals with Arabidopsis in the Title/Abstract since 1997. Globally these countries have the highest number of publications in 2019. The following term was used in the PubMed search box: Arabidopsis[Title/Abstract] AND *COUNTRY* AND ("journal article"[Publication Type] OR "review"[Publication Type]) AND *YEAR*[DP]

See this image and copyright information in PMC

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References

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1. Cao, F. Y. , Khan, M. , Taniguchi, M. , Mirmiran, A. , Moeder, W. , Lumba, S. , Yoshioka, K. , & Desveaux, D. (2019). A host–pathogen interactome uncovers phytopathogenic strategies to manipulate plant ABA responses. Plant J, 100, 187–198. 10.1111/tpj.14425 - DOI - PubMed
1. Cleary, A. , & Farmer, A. (2018). Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. Bioinformatics, 34(9), 1562–1564. 10.1093/bioinformatics/btx757 - DOI - PMC - PubMed
1. Fang, X. , Wang, L. , Ishikawa, R. et al (2019). Arabidopsis FLL2 promotes liquid–liquid phase separation of polyadenylation complexes. Nature, 569, 265–269. 10.1038/s41586-019-1165-8 - DOI - PMC - PubMed
1. Hamm, M. O. , Moss, B. L. , Leydon, A. R. et al (2019). Accelerating structure‐function mapping using the ViVa webtool to mine natural variation. Plant Direct, 3, 1–20. 10.1002/pld3.147 - DOI - PMC - PubMed

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[1] Argueso, C. T. , Assmann, S. M. , Birnbaum, K. D. , Chen, S. , Dinneny, J. R. , Doherty, C. J. , Eveland, A. L. , Friesner, J. , Greenlee, V. R. , Law, J. A. , Marshall‐Colón, A. , Mason, G. A. , O'Lexy, R. , Peck, S. C. , Schmitz, R. J. , Song, L. , Stern, D. , Varagona, M. J. , Walley, J. W. , & Williams, C. M. (2019). Directions for research and training in plant omics: Big Questions and Big Data. Plant Direct., 3(4), e00133 10.1002/pld3.133 - DOI - PMC - PubMed

[2] Argueso, C. T. , Assmann, S. M. , Birnbaum, K. D. , Chen, S. , Dinneny, J. R. , Doherty, C. J. , Eveland, A. L. , Friesner, J. , Greenlee, V. R. , Law, J. A. , Marshall‐Colón, A. , Mason, G. A. , O'Lexy, R. , Peck, S. C. , Schmitz, R. J. , Song, L. , Stern, D. , Varagona, M. J. , Walley, J. W. , & Williams, C. M. (2019). Directions for research and training in plant omics: Big Questions and Big Data. Plant Direct., 3(4), e00133 10.1002/pld3.133 - DOI - PMC - PubMed

[3] Cao, F. Y. , Khan, M. , Taniguchi, M. , Mirmiran, A. , Moeder, W. , Lumba, S. , Yoshioka, K. , & Desveaux, D. (2019). A host–pathogen interactome uncovers phytopathogenic strategies to manipulate plant ABA responses. Plant J, 100, 187–198. 10.1111/tpj.14425 - DOI - PubMed

[4] Cao, F. Y. , Khan, M. , Taniguchi, M. , Mirmiran, A. , Moeder, W. , Lumba, S. , Yoshioka, K. , & Desveaux, D. (2019). A host–pathogen interactome uncovers phytopathogenic strategies to manipulate plant ABA responses. Plant J, 100, 187–198. 10.1111/tpj.14425 - DOI - PubMed

[5] Cleary, A. , & Farmer, A. (2018). Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. Bioinformatics, 34(9), 1562–1564. 10.1093/bioinformatics/btx757 - DOI - PMC - PubMed

[6] Cleary, A. , & Farmer, A. (2018). Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. Bioinformatics, 34(9), 1562–1564. 10.1093/bioinformatics/btx757 - DOI - PMC - PubMed

[7] Fang, X. , Wang, L. , Ishikawa, R. et al (2019). Arabidopsis FLL2 promotes liquid–liquid phase separation of polyadenylation complexes. Nature, 569, 265–269. 10.1038/s41586-019-1165-8 - DOI - PMC - PubMed

[8] Fang, X. , Wang, L. , Ishikawa, R. et al (2019). Arabidopsis FLL2 promotes liquid–liquid phase separation of polyadenylation complexes. Nature, 569, 265–269. 10.1038/s41586-019-1165-8 - DOI - PMC - PubMed

[9] Hamm, M. O. , Moss, B. L. , Leydon, A. R. et al (2019). Accelerating structure‐function mapping using the ViVa webtool to mine natural variation. Plant Direct, 3, 1–20. 10.1002/pld3.147 - DOI - PMC - PubMed

[10] Hamm, M. O. , Moss, B. L. , Leydon, A. R. et al (2019). Accelerating structure‐function mapping using the ViVa webtool to mine natural variation. Plant Direct, 3, 1–20. 10.1002/pld3.147 - DOI - PMC - PubMed

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Current status of the multinational Arabidopsis community

Collaborators

Affiliations

Current status of the multinational Arabidopsis community

Authors

Collaborators

Affiliations

Abstract

Figures

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References

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